CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU75601	Sorghum	cytosol, mitochondrion, plasma membrane	17.63	94.59
Zm00001d002980_P001	Maize	plastid	85.39	84.75
Os04t0524400-01	Rice	plastid	85.14	84.71
TraesCS2D01G374200.1	Wheat	plastid	81.11	81.93
TraesCS2B01G394800.1	Wheat	golgi, plastid	81.11	81.93
TraesCS2A01G377800.1	Wheat	plastid	80.6	81.63
HORVU2Hr1G090260.1	Barley	plastid	79.6	77.45
Os03t0390900-01	Rice	plastid	31.99	61.06
PGSC0003DMT400062339	Potato	mitochondrion	63.22	58.37
Solyc09g011340.2.1	Tomato	plastid	62.72	58.18
EER98239	Sorghum	plastid	59.95	54.59
GSMUA_Achr8P13730_001	Banana	extracellular, plasma membrane	66.25	39.73
EES13002	Sorghum	mitochondrion, plastid	16.12	25.91
EES18163	Sorghum	plastid	26.45	25.42
KXG34151	Sorghum	plastid	26.2	24.88
KXG33587	Sorghum	plastid	19.14	22.16
EES16982	Sorghum	plastid	21.66	15.99
KXG22205	Sorghum	plastid	23.93	12.8
EES03820	Sorghum	mitochondrion	23.43	12.67

Protein Annotations

EnsemblPlants:EES11134	EnsemblPlantsGene:SORBI_3006G152000	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:RETICULATA-related
PANTHER:PTHR31038	PANTHER:PTHR31038:SF8	PFAM:PF11891	ProteinID:EES11134	ProteinID:EES11134.1	RefSeq:XP_002446806.1
SEG:seg	TMHMM:TMhelix	unigene:Sbi.5458	UniParc:UPI0001A86E53	UniProt:C5YCG1	MapMan:35.1

Description

hypothetical protein

Coordinates

chr6:+:51272558..51278399

Molecular Weight (calculated)

41870.2 Da

IEP (calculated)

7.405

GRAVY (calculated)

0.131

Length

397 amino acids

Sequence
(BLAST)

001: MAFAASPSLS ALTSSTTAAA AAAAAAGAAS YSSSTPSSNA FHEPRPLHLS LKPISPLPKP HALSCSAPHI PRAAAGDGSG AGNRGDDSGG NGGKDGGGGE
101: DDDDYEEAEF GPLLGFDEVL RLAAARGVVL PGDMMEAAKD AGIREVLLLR YFDLQAAPWP LGAMIRSFSM LRNRMLADPS FLFKVGTEIV IDSCCATFAE
201: VQKRGKDFWA EFELYAADLL VGVAVDIALV GLLAPYVRIG KPSASTGLFG RFSRMAGSLP SSVFEAERPG CRFTVQQRIG TYFYKGVLYG SVGFVCGIIG
301: QGIANMIMTA KRSVKKSDED IPVPPLVKSA ALWGVFLAVS SNTRYQIING LERVVEASPV ARRVPPVAMA FTVGVRFANN IYGGMQFVDW ARWSGVQ

Best Arabidopsis Sequence Match ( AT5G22790.1 )
(BLAST)

001: MSISLKISHI SSFSNDGFNS VKQCRVSQRF EIRSVCFRRS PGVESRRIHL NSDLSSRNLR NRCVGSDVVT GEISGRSIPD WAYSGVKDET LSDLEPELDD
101: GDGGDENGNN DGGGNGGNGD GGGGGGDGEG DDGEDEADKA EEKEFGPILK FEEVMKETER RGITLPEDML EAAKSVGIRK LFLLRYLDLQ GSVWPLGFLM
201: RSCAMLRNRM LADPSFLFKV GTEVAIDSCC ATFAEVQKRG EDFWSEFELY AADLLVGLVV DVALVGLLAP YARIGKPSVA STGLFKDLKR ACASLPSSVF
301: EAERPGCKFS VNQRIATFFY KGLLYGSVGF GCGLIGQGIA NLIMTAKRSV KKSEEDVPIP PLFESAALWG VFLGLSSNAR YQIINGLERV VEGSTAAKRI
401: PVVAMAFTVG VRFANNVYGG MQFVDWAKLS GVQ

Arabidopsis Description

RER1Protein RETICULATA-RELATED 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FGP9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.