CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d019249_P002	Maize	mitochondrion, plastid	90.37	88.74
Os07t0240300-01	Rice	plastid	83.26	81.94
HORVU2Hr1G049760.6	Barley	cytosol, peroxisome	66.06	80.9
TraesCS2B01G261500.1	Wheat	golgi, unclear	77.75	79.21
TraesCS2D01G241700.1	Wheat	golgi, unclear	77.29	78.74
TraesCS2A01G234300.1	Wheat	mitochondrion, plastid	76.61	78.4
OQU75601	Sorghum	cytosol, mitochondrion, plasma membrane	12.61	74.32
VIT_08s0007g01250.t01	Wine grape	cytosol	56.88	66.49
EES11134	Sorghum	plastid	54.59	59.95
CDX91387	Canola	plastid	56.42	58.02
Bra005154.1-P	Field mustard	plastid	55.96	57.68
CDY59488	Canola	plastid	55.28	57.52
CDY07766	Canola	plastid	54.36	57.25
KRH49190	Soybean	endoplasmic reticulum	58.03	57.11
CDX74930	Canola	plastid	55.28	56.97
KRH00055	Soybean	plastid	57.8	56.63
Bra000024.1-P	Field mustard	plastid	55.28	56.57
AT2G37860.4	Thale cress	plastid	55.28	55.79
EES13002	Sorghum	mitochondrion, plastid	14.91	26.32
KXG34151	Sorghum	plastid	23.17	24.16
EES18163	Sorghum	plastid	22.02	23.24
KXG33587	Sorghum	plastid	18.12	23.03
EES16982	Sorghum	plastid	19.5	15.8
KXG22205	Sorghum	plastid	21.79	12.8
EES03820	Sorghum	mitochondrion	18.81	11.17

Protein Annotations

MapMan:35.1	UniProt:C5XDI9	EnsemblPlants:EER98239	ProteinID:EER98239	ProteinID:EER98239.2	GO:GO:0000302
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009507
GO:GO:0009536	GO:GO:0009628	GO:GO:0009648	GO:GO:0009941	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016787	GO:GO:0043231	GO:GO:0048366	GO:GO:0090305	PFAM:PF11891
PANTHER:PTHR31038	PANTHER:PTHR31038:SF5	InterPro:RETICULATA-related	EnsemblPlantsGene:SORBI_3002G084800	TMHMM:TMhelix	UniParc:UPI00081AC209
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:9029136..9033446

Molecular Weight (calculated)

45456.5 Da

IEP (calculated)

7.653

GRAVY (calculated)

0.069

Length

436 amino acids

Sequence
(BLAST)

001: MSMAFSCAGA RLHGRTGVGG AKCRPGAAAL LGRRGSSCFP ATARRWSTAF PRGIRADLPP PRASADGGGA TSGPAAVAVP EAGDATEQVA AAVAQPAVVL
101: PERLDVDDGA GGNGKLPPAA GGGGGGGGGD GENGGGGDGD EGEDEFGPIL SFDQVVQEAE KRGVSLPSLP ADMVEAAKSV GIQKLLLLRY LDMQASAWPL
201: GPAIRSCSLL RNRMLVDPAF LFKIGTEIVI DTCCATFAEV QKRGEEFWSE FELYAADMLV GVVVNVALVG MLAPYARFGS RSAPEGLLGR VRHAYDALPS
301: SVFEAERPGY KFSVQQRIGT YFFKGILYGS VGFFCGLVGQ GIANLIMTAK RSVKKSEDDV PVPPLLKTSA LWGAFLAVSS NTRYQIINGL ERLVEASPVA
401: KRVPAASLAF TVGVRFANNV YGGMQFVDWA RMSGCQ

Best Arabidopsis Sequence Match ( AT2G37860.3 )
(BLAST)

001: MAGCAMNLQF SSVVKVRNEI SSFGICNRDF VFRDLAKAMK VPVLRIRGGS GRQRSRLFVV NMSQSPIEPQ SGGFAATEQI KGEGDNSILG KDNVRNLGTD
101: QLENLDIDGN VGDGFNGSDG NGGGGGGGNG GEGDGEGEDY EEKEFGPILK FEEVMKETEA RGATLPSDML EAAKNYGIRK VLLLRYLDLQ SSAGLLGFAI
201: RSWAMLRNRM LADPSFLFKI GAEIVIDSCC ATVAEVQKRG KDFWAEFELY VADLLVGTVV NIALVGMLAP YVRFGQPSAS PGFLGRMVFA YNALPSSVFE
301: AERPGCRFSA QQRLATYFYK GIMYGAVGFG CGIVGQGIAN LIMTAKRNIN KSEENIPVPP LIKSAALWGV FLSVSSNTRY QIINGLERVV EASPFAKKFP
401: PAAMAFTVGV RLANNIYGGM QFVDWARLSG CQ

Arabidopsis Description

REProtein RETICULATA, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:B9DFK5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.