CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 1
plastid 3
mitochondrion 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07766	Canola	plastid	94.51	95.65
Bra000024.1-P	Field mustard	plastid	94.99	93.43
CDX91387	Canola	plastid	84.73	83.73
CDX74930	Canola	plastid	84.25	83.45
AT2G37860.4	Thale cress	plastid	85.2	82.64
VIT_08s0007g01250.t01	Wine grape	cytosol	62.05	69.71
HORVU2Hr1G049760.6	Barley	cytosol, peroxisome	53.46	62.92
KRH49190	Soybean	endoplasmic reticulum	65.16	61.63
KRH00055	Soybean	plastid	64.92	61.12
CDY26956	Canola	plastid	58.71	58.43
CDX92336	Canola	plastid	58.0	57.45
EER98239	Sorghum	plastid	57.52	55.28
TraesCS2B01G261500.1	Wheat	golgi, unclear	56.32	55.14
TraesCS2A01G234300.1	Wheat	mitochondrion, plastid	55.85	54.93
TraesCS2D01G241700.1	Wheat	golgi, unclear	56.09	54.91
Os07t0240300-01	Rice	plastid	57.28	54.18
Zm00001d019249_P002	Maize	mitochondrion, plastid	57.28	54.05
CDX88782	Canola	plastid	53.22	38.58
CDX71014	Canola	plastid	54.42	38.58
CDX70479	Canola	plastid	23.15	25.87
CDX78491	Canola	plastid	23.15	25.8
CDY53965	Canola	plastid	23.15	25.59
CDX97204	Canola	plastid	22.67	25.4
CDY35990	Canola	plastid	19.33	25.16
CDY27990	Canola	plastid	19.09	24.92
CDY22156	Canola	plastid	18.85	23.17
CDY66586	Canola	plastid	18.85	23.1
CDX80466	Canola	plastid	19.81	15.75
CDX87117	Canola	plastid	19.57	15.59
CDY52926	Canola	plastid	22.2	12.52
CDX93185	Canola	plastid	21.96	12.5
CDX67635	Canola	plastid	21.72	12.25
CDY31998	Canola	plastid	21.48	12.11
CDX88129	Canola	cytosol	18.85	4.57
CDY67668	Canola	mitochondrion	0.95	2.37

Protein Annotations

EnsemblPlants:CDY59488	EnsemblPlantsGene:GSBRNA2T00026181001	GO:A0A078J1N5	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:RETICULATA-related	PANTHER:PTHR31038	PANTHER:PTHR31038:SF5	PFAM:PF11891	ProteinID:CDY59488	ProteinID:CDY59488.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EF0420	UniProt:A0A078J1N5	MapMan:35.1	:

Description

BnaC03g72100DBnaC03g72100D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J1N5]

Coordinates

chrLK033769:+:37583..39431

Molecular Weight (calculated)

45466.6 Da

IEP (calculated)

5.059

GRAVY (calculated)

-0.011

Length

419 amino acids

Sequence
(BLAST)

001: MSGCAMNFQL SSVVKCRNDI SSLRICNRDF VFGDLVKEMK VADLRIKGTQ RSRLLVVNMS QSPIERQSVV EVESDVNLGK GDNVRNLGTD ETEKFESDGN
101: VGDGFNGGDG NGGFNNGGGG GDGEEDYEEK EFGPVLKFEE VMRETEARGA TLPSDMLEAA KTFGIRNLLL LRYLDLQSSP GVLGFAIRSW SMLRNRMLAD
201: PSFLFKIGTE IVIDSCCATV AEVQKRGKDF WAEFELYVAD LLVGVVVNVA LVGMLAPFVR FGQPSASTGS LGRMLNAYNA LPSSVFEAER PGCSFSAQQR
301: LATYFYKGIM YGAVGFGCGI VGQGIANLIM TAKRSINKSE EDIPVPPLVK SAALWGVFLS VSSNTRYQII NGLERVVEAS PFAKKVPPAA LAFTVGVRFA
401: NNIYGGMQFV DWARLSGCQ

Best Arabidopsis Sequence Match ( AT2G37860.3 )
(BLAST)

001: MAGCAMNLQF SSVVKVRNEI SSFGICNRDF VFRDLAKAMK VPVLRIRGGS GRQRSRLFVV NMSQSPIEPQ SGGFAATEQI KGEGDNSILG KDNVRNLGTD
101: QLENLDIDGN VGDGFNGSDG NGGGGGGGNG GEGDGEGEDY EEKEFGPILK FEEVMKETEA RGATLPSDML EAAKNYGIRK VLLLRYLDLQ SSAGLLGFAI
201: RSWAMLRNRM LADPSFLFKI GAEIVIDSCC ATVAEVQKRG KDFWAEFELY VADLLVGTVV NIALVGMLAP YVRFGQPSAS PGFLGRMVFA YNALPSSVFE
301: AERPGCRFSA QQRLATYFYK GIMYGAVGFG CGIVGQGIAN LIMTAKRNIN KSEENIPVPP LIKSAALWGV FLSVSSNTRY QIINGLERVV EASPFAKKFP
401: PAAMAFTVGV RLANNIYGGM QFVDWARLSG CQ

Arabidopsis Description

REProtein RETICULATA, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:B9DFK5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.