Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- cytosol 2
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY07766 | Canola | plastid | 82.18 | 85.75 |
| CDY59488 | Canola | plastid | 82.64 | 85.2 |
| Bra000024.1-P | Field mustard | plastid | 83.1 | 84.27 |
| VIT_08s0007g01250.t01 | Wine grape | cytosol | 60.65 | 70.24 |
| HORVU2Hr1G049760.6 | Barley | cytosol, peroxisome | 50.69 | 61.52 |
| KRH00055 | Soybean | plastid | 62.96 | 61.12 |
| KRH49190 | Soybean | endoplasmic reticulum | 62.27 | 60.72 |
| AT5G22790.1 | Thale cress | plastid | 57.64 | 57.51 |
| EER98239 | Sorghum | plastid | 55.79 | 55.28 |
| TraesCS2B01G261500.1 | Wheat | golgi, unclear | 54.63 | 55.14 |
| TraesCS2A01G234300.1 | Wheat | mitochondrion, plastid | 54.17 | 54.93 |
| TraesCS2D01G241700.1 | Wheat | golgi, unclear | 54.4 | 54.91 |
| Os07t0240300-01 | Rice | plastid | 54.86 | 53.5 |
| Zm00001d019249_P002 | Maize | mitochondrion, plastid | 54.63 | 53.15 |
| AT3G08640.1 | Thale cress | plastid | 20.14 | 25.82 |
| AT5G12470.1 | Thale cress | plastid | 22.92 | 25.65 |
| AT3G08630.1 | Thale cress | plastid | 18.98 | 24.19 |
| AT5G24690.1 | Thale cress | plastid | 19.44 | 16.12 |
| AT2G40400.1 | Thale cress | plastid | 21.53 | 12.65 |
| AT3G56140.1 | Thale cress | plastid | 21.3 | 12.35 |
Protein Annotations
| MapMan:35.1 | EntrezGene:818362 | ProteinID:AEC09457.1 | ProteinID:AEC09458.1 | ProteinID:AEC09459.1 | EMBL:AK316808 |
| EMBL:AK318956 | ProteinID:ANM61867.1 | ArrayExpress:AT2G37860 | EnsemblPlantsGene:AT2G37860 | RefSeq:AT2G37860 | TAIR:AT2G37860 |
| RefSeq:AT2G37860-TAIR-G | EnsemblPlants:AT2G37860.4 | EMBL:AY081345 | Unigene:At.14627 | UniProt:B9DFK5 | EMBL:BT002153 |
| GO:GO:0000302 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006950 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009628 | GO:GO:0009648 |
| GO:GO:0009941 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0031969 | GO:GO:0048366 | Symbol:LCD1 |
| RefSeq:NP_001031506.1 | RefSeq:NP_001324059.1 | RefSeq:NP_850287.1 | RefSeq:NP_850288.2 | PFAM:PF11891 | PANTHER:PTHR31038 |
| PANTHER:PTHR31038:SF5 | InterPro:RETICULATA-related | TMHMM:TMhelix | UniParc:UPI000017A6FB | SEG:seg | : |
Description
REProtein RETICULATA, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:B9DFK5]
Coordinates
chr2:+:15856588..15858966
Molecular Weight (calculated)
46632.2 Da
IEP (calculated)
7.646
GRAVY (calculated)
-0.019
Length
432 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGCAMNLQF SSVVKVRNEI SSFGICNRDF VFRDLAKAMK VPVLRIRGGS GRQRSRLFVV NMSQSPIEPQ SGGFAATEQI KGEGDNSILG KDNVRNLGTD
101: QLENLDIDGN VGDGFNGSDG NGGGGGGGNG GEGDGEGEDY EEKEFGPILK FEEVMKETEA RGATLPSDML EAAKNYGIRK VLLLRYLDLQ SSAGLLGFAI
201: RSWAMLRNRM LADPSFLFKI GAEIVIDSCC ATVAEVQKRG KDFWAEFELY VADLLVGTVV NIALVGMLAP YVRFGQPSAS PGFLGRMVFA YNALPSSVFE
301: AERPGCRFSA QQRLATYFYK GIMYGAVGFG CGIVGQGIAN LIMTAKRNIN KSEENIPVPP LIKSAALWGV FLSVSSNTRY QIINGLERVV EASPFAKKFP
401: PAAMAFTVGV RLANNIYGGM QFVDWARLSG CQ
101: QLENLDIDGN VGDGFNGSDG NGGGGGGGNG GEGDGEGEDY EEKEFGPILK FEEVMKETEA RGATLPSDML EAAKNYGIRK VLLLRYLDLQ SSAGLLGFAI
201: RSWAMLRNRM LADPSFLFKI GAEIVIDSCC ATVAEVQKRG KDFWAEFELY VADLLVGTVV NIALVGMLAP YVRFGQPSAS PGFLGRMVFA YNALPSSVFE
301: AERPGCRFSA QQRLATYFYK GIMYGAVGFG CGIVGQGIAN LIMTAKRNIN KSEENIPVPP LIKSAALWGV FLSVSSNTRY QIINGLERVV EASPFAKKFP
401: PAAMAFTVGV RLANNIYGGM QFVDWARLSG CQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.