CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH00055	Soybean	plastid	92.1	91.69
CDY07766	Canola	plastid	61.4	65.7
HORVU2Hr1G049760.6	Barley	cytosol, peroxisome	52.37	65.17
CDY59488	Canola	plastid	61.63	65.16
CDX91387	Canola	plastid	62.3	65.09
Bra005154.1-P	Field mustard	plastid	62.08	65.01
CDX74930	Canola	plastid	62.08	65.01
Bra000024.1-P	Field mustard	plastid	62.08	64.55
KRH26562	Soybean	plastid	54.85	63.28
AT2G37860.4	Thale cress	plastid	60.72	62.27
KRH22744	Soybean	plastid	53.27	61.14
EER98239	Sorghum	plastid	57.11	58.03
TraesCS2B01G261500.1	Wheat	golgi, unclear	55.76	57.71
TraesCS2A01G234300.1	Wheat	mitochondrion, plastid	55.3	57.51
Os07t0240300-01	Rice	plastid	57.34	57.34
TraesCS2D01G241700.1	Wheat	golgi, unclear	55.3	57.24
Zm00001d019249_P002	Maize	mitochondrion, plastid	56.43	56.31
KRH33749	Soybean	plastid	25.06	38.95
KRH09563	Soybean	plastid	20.99	29.06
KRH24069	Soybean	endoplasmic reticulum, mitochondrion	22.35	27.2
KRH40643	Soybean	mitochondrion	20.77	26.36
KRH23903	Soybean	nucleus, plastid	21.9	26.08
KRH00511	Soybean	endoplasmic reticulum	20.32	25.94
KRH29040	Soybean	endoplasmic reticulum	21.44	25.82
KRH39906	Soybean	mitochondrion, plastid	21.9	25.8
KRG88973	Soybean	plastid	20.99	23.66
KRH44019	Soybean	mitochondrion, nucleus, plastid	18.06	15.41
KRH10440	Soybean	endoplasmic reticulum, nucleus, plastid	17.83	15.11
KRG97671	Soybean	plastid	18.06	10.71
KRH31203	Soybean	plastid	18.06	10.7

Protein Annotations

EMBL:ACUP02004340	EnsemblPlants:KRH49190	EnsemblPlantsGene:GLYMA_07G138400	EntrezGene:100780872	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:RETICULATA-related	PANTHER:PTHR31038	PANTHER:PTHR31038:SF5	PFAM:PF11891	ProteinID:KRH49190
ProteinID:KRH49190.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI000233852A	UniProt:I1KK44	MapMan:35.1

Description

hypothetical protein

Coordinates

chr7:+:16431876..16436583

Molecular Weight (calculated)

47642.1 Da

IEP (calculated)

4.813

GRAVY (calculated)

-0.031

Length

443 amino acids

Sequence
(BLAST)

001: MAGCSSNFAV ARFANVRKEV VLGNEETNLI RLSFRGVLNE SAFQVLRGSK CGRSCVPMQE KAMFLIMSMS QPSAENESQS AVTSIGLSEG GGDNVLSNDD
101: GTRDSEPDSK NERNDDNGVV LDGSGGNGNF GSGGAGDGSG GGGGDDDGND NEEEEFGPIL KYDEVMRETE ARGATLPLDM IEAAKSVGIR KVLLLRYLDL
201: QGSFWPLGFF MKSCSMLRNR MLADPAFLFK IGSEIVIDTC CATFAEIQKR GKDFWAEFEL YLADLLVGLV VNVALVGMLA PYARIGKPSI SSGFLGRMQK
301: AYAALPSSVF EAERPGCRFS VQQRLGTYFY KGIMYGAVGF GCGIIGQGIA NLIMTAKRSI KTSEEDIPVP PLVKSAALWG VFLAISSNTR YQIVNGLERL
401: VEASPLAKQV PPVALAFTVG VRFANNVYGG MQFVDWARWS GVQ

Best Arabidopsis Sequence Match ( AT2G37860.3 )
(BLAST)

001: MAGCAMNLQF SSVVKVRNEI SSFGICNRDF VFRDLAKAMK VPVLRIRGGS GRQRSRLFVV NMSQSPIEPQ SGGFAATEQI KGEGDNSILG KDNVRNLGTD
101: QLENLDIDGN VGDGFNGSDG NGGGGGGGNG GEGDGEGEDY EEKEFGPILK FEEVMKETEA RGATLPSDML EAAKNYGIRK VLLLRYLDLQ SSAGLLGFAI
201: RSWAMLRNRM LADPSFLFKI GAEIVIDSCC ATVAEVQKRG KDFWAEFELY VADLLVGTVV NIALVGMLAP YVRFGQPSAS PGFLGRMVFA YNALPSSVFE
301: AERPGCRFSA QQRLATYFYK GIMYGAVGFG CGIVGQGIAN LIMTAKRNIN KSEENIPVPP LIKSAALWGV FLSVSSNTRY QIINGLERVV EASPFAKKFP
401: PAAMAFTVGV RLANNIYGGM QFVDWARLSG CQ

Arabidopsis Description

REProtein RETICULATA, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:B9DFK5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.