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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, endoplasmic reticulum

Predictor Summary:
  • plastid 9
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, mitochondrion
Any Predictor:plasma membrane, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:plastid
Plant-mPloc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plasma membrane
 endoplasmic reticulum: 28499913
mitochondrion: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH29040 Soybean endoplasmic reticulum 95.05 94.02
Bra008880.1-P Field mustard cytosol 61.26 79.36
GSMUA_Achr8P00440_001 Banana cytosol, plasma membrane, plastid 44.78 76.17
HORVU0Hr1G000510.2 Barley cytosol 43.41 69.3
CDX97204 Canola plastid 67.03 65.24
CDX70479 Canola plastid 66.76 64.8
CDY53965 Canola plastid 67.31 64.64
CDX78491 Canola plastid 66.21 64.1
AT5G12470.1 Thale cress plastid 67.86 63.99
KRH39906 Soybean mitochondrion, plastid 65.93 63.83
Bra006164.1-P Field mustard plastid 66.21 63.76
KRH23903 Soybean nucleus, plastid 64.84 63.44
GSMUA_Achr8P08530_001 Banana plastid 65.38 63.3
Zm00001d038085_P001 Maize plastid 64.29 60.47
Os05t0388600-01 Rice plasma membrane 62.64 60.32
TraesCS1B01G254100.1 Wheat unclear 62.91 59.95
TraesCS1D01G242600.1 Wheat golgi 63.19 59.9
TraesCS1A01G242600.1 Wheat plastid 62.64 59.38
Os01t0957200-01 Rice plastid 61.26 57.33
PGSC0003DMT400082409 Potato plastid 64.56 57.18
EES18163 Sorghum plastid 64.56 56.9
Solyc11g065490.1.1 Tomato plastid 64.29 56.66
HORVU3Hr1G109880.1 Barley plastid 57.97 54.24
KRG88973 Soybean plastid 55.77 51.65
Zm00001d042050_P001 Maize plastid 57.14 50.12
KXG34151 Sorghum plastid 54.67 47.61
KRH09563 Soybean plastid 23.08 26.25
KRH26562 Soybean plastid 27.47 26.04
KRH22744 Soybean plastid 26.37 24.87
KRH00511 Soybean endoplasmic reticulum 23.63 24.78
KRH40643 Soybean mitochondrion 23.35 24.36
KRH00055 Soybean plastid 28.57 23.37
KRH49190 Soybean endoplasmic reticulum 27.2 22.35
KRH33749 Soybean plastid 12.64 16.14
KRG97671 Soybean plastid 32.97 16.06
KRH31203 Soybean plastid 32.69 15.91
KRH44019 Soybean mitochondrion, nucleus, plastid 20.6 14.45
KRH10440 Soybean endoplasmic reticulum, nucleus, plastid 20.05 13.96
Protein Annotations
EMBL:ACUP02007169EnsemblPlants:KRH24069EnsemblPlantsGene:GLYMA_12G020000EntrezGene:100811998InterPro:RETICULATA-relatedPANTHER:PTHR31620
PANTHER:PTHR31620:SF11PFAM:PF11891ProteinID:KRH24069ProteinID:KRH24069.1SEG:segUniParc:UPI000233D74D
UniProt:I1LPA6MapMan:35.1::::
Description
hypothetical protein
Coordinates
chr12:+:1409531..1413305
Molecular Weight (calculated)
38805.8 Da
IEP (calculated)
8.461
GRAVY (calculated)
0.207
Length
364 amino acids
Sequence
(BLAST)
001: MSIAFSFFTP LSSKSVPSFS LSTPSLCFRL TPLRRPTDRF YPLCSSAGGP GGGSFGGHGG PGHGGHGGGG GGGGHDNDDN ERKNEALLVV AEAGRSLESV
101: PADLAAAIKD GKIPASVVSR FLELEKSPFF RWLLQFTGFR ERLLADDLFL AKVAMECGVG VFTKTAAEYE KRRENFFNEL EIVFADVAMA IIADFMLVYL
201: PAPTVALRPP LALTAGPIAK FFHGCPDNAF QVALSGASYS LIQRVGAIVR NGAKLFAVGT ASSLVGTAMT NAFINAKKAV NKTSEGEIEN VPILSTSAAY
301: GVYMAVSSNL RYQVLAGIIE QRLLEPLLHQ HKLILSALCF AVRTGNTYLG SLLWVDYARF VGVQ
Best Arabidopsis Sequence Match ( AT5G12470.1 )
(BLAST)
001: MAIASCFFCV PTPNTAISES NLTWPHIASF PRLSSSSSFN GVISAKSISF NRRVPITPVL SASSGNGGSD NNGGGLSGGG GGGDGGKNDG DGHGDEDRDR
101: NRNEAMLLLK ESGIELESLP KDLAAAIEAG RIPGSVITRF LELQKSAVMR WLMQFGGFRE RLLADDLFMA KLAMECGVGI FTKTAAEYER RRENFFNELE
201: VVFADVAMAI IADFMLVYLP APTVSLRPPL ALTAGGISKF FHNCPDNAFQ VALSGTSYTL LQRLGAITRN GAKLFAVGTT SSLVGTAITN AFIKARKAVD
301: QNSEGEVETV PIVSTSVAYG VYMAVSSNLR YQIVAGVIEQ RLLEPMLHQH KLALSALCFA VRTGNTFLGS LLWVDYARLI GIQKSH
Arabidopsis Description
RER4Protein RETICULATA-RELATED 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94CJ5]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.