CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, nucleus

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH44019	Soybean	mitochondrion, nucleus, plastid	95.03	95.76
VIT_12s0034g01330.t01	Wine grape	cytosol	30.59	76.56
GSMUA_Achr2P05940_001	Banana	cytosol, extracellular, plasma membrane	61.38	73.29
VIT_12s0034g01370.t01	Wine grape	plastid	71.89	72.17
Solyc01g104270.2.1	Tomato	plastid	68.26	68.13
PGSC0003DMT400061143	Potato	plastid	68.07	67.94
Solyc10g045620.1.1	Tomato	cytosol	43.4	66.96
AT5G24690.1	Thale cress	plastid	66.54	66.79
CDX80466	Canola	plastid	66.73	66.22
Bra009789.1-P	Field mustard	plastid	66.54	65.78
Bra036522.1-P	Field mustard	plastid	65.39	65.77
CDX87117	Canola	plastid	65.77	65.4
Zm00001d041036_P001	Maize	cytosol	42.26	64.24
Os12t0283800-01	Rice	extracellular, plastid	28.68	63.56
HORVU7Hr1G082560.2	Barley	mitochondrion	49.14	61.34
Solyc10g045630.1.1	Tomato	plastid	29.45	58.78
TraesCS5A01G110400.1	Wheat	plastid	57.74	56.66
TraesCS5B01G110100.1	Wheat	golgi	57.55	56.58
TraesCS5D01G123000.1	Wheat	plastid	57.55	56.37
EES16982	Sorghum	plastid	57.74	56.13
Zm00001d023791_P002	Maize	plasma membrane	56.02	54.56
HORVU5Hr1G030040.1	Barley	plastid	57.17	54.56
TraesCS7A01G335500.1	Wheat	plastid	51.63	54.55
TraesCS7B01G247100.1	Wheat	plastid	51.82	54.42
TraesCS7D01G343200.1	Wheat	plastid	51.43	54.02
KRH29040	Soybean	endoplasmic reticulum	14.34	20.38
KRH26562	Soybean	plastid	14.91	20.31
CDX88129	Canola	cytosol	66.92	20.23
KRH39906	Soybean	mitochondrion, plastid	14.53	20.21
KRH40643	Soybean	mitochondrion	13.38	20.06
KRH24069	Soybean	endoplasmic reticulum, mitochondrion	13.96	20.05
KRH23903	Soybean	nucleus, plastid	14.15	19.89
KRH09563	Soybean	plastid	11.85	19.38
KRH00511	Soybean	endoplasmic reticulum	12.81	19.31
KRH22744	Soybean	plastid	14.15	19.17
Os05t0474600-02	Rice	cytosol	15.87	19.12
KRG88973	Soybean	plastid	13.96	18.58
KRH49190	Soybean	endoplasmic reticulum	15.11	17.83
KRH00055	Soybean	plastid	14.72	17.3
KRG97671	Soybean	plastid	19.5	13.65
KRH31203	Soybean	plastid	19.5	13.64
KRH33749	Soybean	plastid	6.31	11.58
Os05t0474500-01	Rice	cytosol	0.38	0.39

Protein Annotations

EMBL:ACUP02009142	EnsemblPlants:KRH10440	EnsemblPlantsGene:GLYMA_15G047200	EntrezGene:100783760	InterPro:RETICULATA-related	PANTHER:PTHR31038
PANTHER:PTHR31038:SF2	PFAM:PF11891	ProteinID:KRH10440	ProteinID:KRH10440.1	SEG:seg	UniParc:UPI000233BBBB
UniProt:I1MDP6	MapMan:35.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr15:-:3748485..3751900

Molecular Weight (calculated)

57669.0 Da

IEP (calculated)

8.688

GRAVY (calculated)

-0.198

Length

523 amino acids

Sequence
(BLAST)

001: MIPALSQFKV NHVGVGFNSP SPNPIPMLPT LSHRRCVLRV SVRSYSSDDF NTLKITAHVE TDSTVHLERC FNAPVSSHLP SISMKGGQYG AFGAVTLEKS
101: KLDLSQKQTS FSPELDIGGG GGDIGKKINH GGGDGGDDDG DDDDYFDDFD DGDEGDEGGL FRRRILFEEL FDRKFVDAVL NEWQKTMMDL PAGLRQAYEM
201: GLVSSAQMVK FLAINARPTT SRFISRTLPQ ALSRSFIGRL LADPAFLYRF LLEEAATVGC SLWWEIKNRK DRIKQEWDLA LMNVMTAAAC NALVVWSLAP
301: CRSYGNTFRF DLQNTLQKLP NNIFEKSYPL REFDMQKRIQ CFLFKAAELC MVGLSAGAVQ GALSNSLASK KEGRLSVTVP SVSSNALGYG AFLGIYANLR
401: YQLLCGFDRA MMTHFDVIGV ALFFSTTFRI LNVQLGETSK RAWLGVEADP LAQSDDLLKV YNRTSENVEK SSSKWFISKN AVVSGLGLLG IKQRNTDGSG
501: AESSAPKTRR KRIVRKKVAA GSA

Best Arabidopsis Sequence Match ( AT5G24690.1 )
(BLAST)

001: MSHMVFQSVV APKPLSPLKP CLPIPRPLVT LPCKLRRGFV RASSSSFLVD DSVSGLERCL QLPSGVELGT SSSGSFSAST QMCPVMKGKF GSVGAVTLEK
101: GKLDMTQKIS ETSPEIATGG GGGNIGKSIN NGGGDGGDDN GDDDDYFDEF DDGDEGDDDG LFRRRMFLAE IFDRKFVDAV LNEWQKTMMD LPAGLRQAYE
201: MGLVSSAQMV KFLAINARPT TTRMISRALP QGLSRAFVGR MLADPAFLYK LLLEQAATVG CSVWWEVKNR KNRLKEEWDL ALINVLTVSA CNAAAVWLLA
301: PCRSYGNTFR FDLQNTLQKL PNNLFEMSYP LREFDLQKRF HSLFYKAAEL SILGLAAGTL QGSLSNVLAG KKKNRVSVTV PSISTNALGY GAFLGIYANL
401: RYQLLCGFER GVSSHFDVIG VALFFGTALR IMNVQLGEKS RQVWLGVEAD PLAQSDDLLA KAYNRPSEEA VAKPSSKWFI SKNAIVSGLL GKKQEDSVSD
501: SPPPKARRKR IVRKKVAASA S

Arabidopsis Description

AT5g24690/MXC17_8 [Source:UniProtKB/TrEMBL;Acc:Q93W02]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.