CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22744	Soybean	plastid	91.41	90.93
PGSC0003DMT400001155	Potato	plastid	64.84	65.01
Solyc11g066740.1.1	Tomato	plastid	64.58	64.75
VIT_06s0061g01160.t01	Wine grape	plastid	68.75	64.55
CDY26956	Canola	plastid	65.62	59.86
Bra002429.1-P	Field mustard	plastid	65.1	59.52
CDX92336	Canola	plastid	65.1	59.1
AT5G22790.1	Thale cress	plastid	65.36	57.97
KRH49190	Soybean	endoplasmic reticulum	63.28	54.85
KRH00055	Soybean	plastid	63.02	54.38
CDX88782	Canola	plastid	61.46	40.83
CDX71014	Canola	plastid	62.24	40.44
Bra006636.1-P	Field mustard	plastid	61.72	40.37
KRH33749	Soybean	plastid	24.22	32.63
KRH24069	Soybean	endoplasmic reticulum, mitochondrion	26.04	27.47
KRH29040	Soybean	endoplasmic reticulum	25.78	26.9
KRH23903	Soybean	nucleus, plastid	25.78	26.61
KRH39906	Soybean	mitochondrion, plastid	26.04	26.6
KRH09563	Soybean	plastid	21.61	25.94
KRH00511	Soybean	endoplasmic reticulum	21.35	23.63
KRH40643	Soybean	mitochondrion	21.35	23.5
KRG88973	Soybean	plastid	23.7	23.16
KRH10440	Soybean	endoplasmic reticulum, nucleus, plastid	20.31	14.91
KRH44019	Soybean	mitochondrion, nucleus, plastid	20.05	14.84
KRG97671	Soybean	plastid	22.4	11.51
KRH31203	Soybean	plastid	22.4	11.5

Protein Annotations

EMBL:ACUP02007721	EnsemblPlants:KRH26562	EnsemblPlantsGene:GLYMA_12G180500	EntrezGene:100808085	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:RETICULATA-related	PANTHER:PTHR31038	PANTHER:PTHR31038:SF9	PFAM:PF11891	ProteinID:KRH26562
ProteinID:KRH26562.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI000233C57F	UniProt:K7LVN1	MapMan:35.1

Description

hypothetical protein

Coordinates

chr12:+:34086463..34090398

Molecular Weight (calculated)

41377.2 Da

IEP (calculated)

7.500

GRAVY (calculated)

0.086

Length

384 amino acids

Sequence
(BLAST)

001: MSAFTISNNA AAATATWPLP QFNTCHFPHS PSIVLHHSLL NIRAFRIHCV PQEPLPPLQQ QPKHDQLSPG GDGGHGDAGG GGGGGGDGGE GGGDEEFGPL
101: LKFEAVMRES EARGVKLPPD MVEAARITGI REMFLLRYLE LQGSSWPLSF LMQHCAMLRN RMLADPSFLF KVGTEIVIDS CCATFAEVQK RGKDFWAEFE
201: LYAADLLVGV VVDIALVGLL APYARIGKPS LSKGLLGQIQ HACAALPSSV FEAERPGCKF STMQRIATYF YKGALYGSVG FGCGIIGQGI ANMIMNAKRS
301: IKKSEDDIPV PPLLKSAALW GFFLAVSSNT RYQIINGLEN IVEASPVAKR VPLVAMAFTV GVRFGNNIYG GMQFVDWAKW SGVQ

Best Arabidopsis Sequence Match ( AT5G22790.1 )
(BLAST)

001: MSISLKISHI SSFSNDGFNS VKQCRVSQRF EIRSVCFRRS PGVESRRIHL NSDLSSRNLR NRCVGSDVVT GEISGRSIPD WAYSGVKDET LSDLEPELDD
101: GDGGDENGNN DGGGNGGNGD GGGGGGDGEG DDGEDEADKA EEKEFGPILK FEEVMKETER RGITLPEDML EAAKSVGIRK LFLLRYLDLQ GSVWPLGFLM
201: RSCAMLRNRM LADPSFLFKV GTEVAIDSCC ATFAEVQKRG EDFWSEFELY AADLLVGLVV DVALVGLLAP YARIGKPSVA STGLFKDLKR ACASLPSSVF
301: EAERPGCKFS VNQRIATFFY KGLLYGSVGF GCGLIGQGIA NLIMTAKRSV KKSEEDVPIP PLFESAALWG VFLGLSSNAR YQIINGLERV VEGSTAAKRI
401: PVVAMAFTVG VRFANNVYGG MQFVDWAKLS GVQ

Arabidopsis Description

RER1Protein RETICULATA-RELATED 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FGP9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.