CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH26562	Soybean	plastid	90.93	91.41
PGSC0003DMT400001155	Potato	plastid	63.73	64.23
Solyc11g066740.1.1	Tomato	plastid	63.21	63.71
VIT_06s0061g01160.t01	Wine grape	plastid	65.8	62.1
Bra002429.1-P	Field mustard	plastid	63.21	58.1
CDY26956	Canola	plastid	62.95	57.72
CDX92336	Canola	plastid	62.95	57.45
AT5G22790.1	Thale cress	plastid	63.21	56.35
KRH49190	Soybean	endoplasmic reticulum	61.14	53.27
KRH00055	Soybean	plastid	60.88	52.81
CDX88782	Canola	plastid	58.55	39.1
Bra006636.1-P	Field mustard	plastid	58.81	38.67
CDX71014	Canola	plastid	59.07	38.58
KRH33749	Soybean	plastid	23.58	31.93
KRH09563	Soybean	plastid	22.02	26.56
KRH24069	Soybean	endoplasmic reticulum, mitochondrion	24.87	26.37
KRH29040	Soybean	endoplasmic reticulum	24.61	25.82
KRH23903	Soybean	nucleus, plastid	24.87	25.81
KRH39906	Soybean	mitochondrion, plastid	25.13	25.8
KRH00511	Soybean	endoplasmic reticulum	21.76	24.21
KRH40643	Soybean	mitochondrion	21.76	24.07
KRG88973	Soybean	plastid	22.8	22.39
KRH10440	Soybean	endoplasmic reticulum, nucleus, plastid	19.17	14.15
KRH44019	Soybean	mitochondrion, nucleus, plastid	18.91	14.07
KRH31203	Soybean	plastid	21.76	11.23
KRG97671	Soybean	plastid	21.5	11.11

Protein Annotations

EMBL:ACUP02008432	EnsemblPlants:KRH22744	EnsemblPlantsGene:GLYMA_13G320300	EntrezGene:100799853	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:RETICULATA-related	PANTHER:PTHR31038	PANTHER:PTHR31038:SF9	PFAM:PF11891	ProteinID:KRH22744
ProteinID:KRH22744.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI000233E3DF	UniProt:I1MS74	MapMan:35.1

Description

hypothetical protein

Coordinates

chr13:-:41475746..41479710

Molecular Weight (calculated)

41531.2 Da

IEP (calculated)

8.021

GRAVY (calculated)

0.038

Length

386 amino acids

Sequence
(BLAST)

001: MPAFAISNNA AAATWKIPQF NTCHFPHTPS IVLHHSLLNT RAFRIHCVPQ EPLPSLQQTK HDQPSSSGGG GHGDADGDGG GGGGGGDGDG GQGGGDEEFG
101: PLLKFEAVMR ESKARGVKLP PDMEEAARIT GIREMFLLRY MELQGSSWPV SFLIQHCAML RNRMLADPSF LFKVGTEIVI DSCCATLAEV QKRGKNFWAE
201: FELYAADLLV GVVVDIALVG LLAPYARIGK PSFSKGLLGQ IQHACAALPS SVFEAERPGC KFSVMQRVST YFYKGALYGS VGFGCGIIGQ GIANMIMNAK
301: RSFKKSEHDI PVPPLLQSAA LWGFFLAVSS NTRYQIINGL ESLVEASPVA KRVPLVAMAF TVGVRFGNNI YGGMQFVDWA KWSGVQ

Best Arabidopsis Sequence Match ( AT5G22790.1 )
(BLAST)

001: MSISLKISHI SSFSNDGFNS VKQCRVSQRF EIRSVCFRRS PGVESRRIHL NSDLSSRNLR NRCVGSDVVT GEISGRSIPD WAYSGVKDET LSDLEPELDD
101: GDGGDENGNN DGGGNGGNGD GGGGGGDGEG DDGEDEADKA EEKEFGPILK FEEVMKETER RGITLPEDML EAAKSVGIRK LFLLRYLDLQ GSVWPLGFLM
201: RSCAMLRNRM LADPSFLFKV GTEVAIDSCC ATFAEVQKRG EDFWSEFELY AADLLVGLVV DVALVGLLAP YARIGKPSVA STGLFKDLKR ACASLPSSVF
301: EAERPGCKFS VNQRIATFFY KGLLYGSVGF GCGLIGQGIA NLIMTAKRSV KKSEEDVPIP PLFESAALWG VFLGLSSNAR YQIINGLERV VEGSTAAKRI
401: PVVAMAFTVG VRFANNVYGG MQFVDWAKLS GVQ

Arabidopsis Description

RER1Protein RETICULATA-RELATED 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FGP9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.