Factsheet for Bra002429.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92336	Canola	plastid	97.38	96.69
AT5G22790.1	Thale cress	plastid	85.71	83.14
PGSC0003DMT400001155	Potato	plastid	59.76	65.54
KRH26562	Soybean	plastid	59.52	65.1
Solyc11g066740.1.1	Tomato	plastid	58.81	64.49
KRH22744	Soybean	plastid	58.1	63.21
VIT_06s0061g01160.t01	Wine grape	plastid	59.29	60.88
Bra005154.1-P	Field mustard	plastid	58.57	58.16
Bra006636.1-P	Field mustard	plastid	80.71	57.75
Bra000024.1-P	Field mustard	plastid	57.86	57.04
Bra008880.1-P	Field mustard	cytosol	19.52	29.18
Bra040052.1-P	Field mustard	golgi, plasma membrane, plastid	16.19	27.64
Bra029704.1-P	Field mustard	plastid	20.0	26.17
Bra006164.1-P	Field mustard	plastid	21.67	24.07
Bra036522.1-P	Field mustard	plastid	20.48	16.54
Bra009789.1-P	Field mustard	plastid	20.48	16.26
Bra017008.1-P	Field mustard	plastid	23.1	13.06
Bra003229.1-P	Field mustard	plastid	22.38	12.69

Protein Annotations

EnsemblPlants:Bra002429.1	EnsemblPlants:Bra002429.1-P	EnsemblPlantsGene:Bra002429	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:RETICULATA-related	PANTHER:PTHR31038	PANTHER:PTHR31038:SF9	PFAM:PF11891	SEG:seg	TMHMM:TMhelix
UniParc:UPI00025442CF	UniProt:M4CDZ8	MapMan:35.1	:	:	:

Description

AT5G22790 (E=7e-148) RER1 | RER1 (RETICULATA-RELATED 1)

Coordinates

chrA10:+:9619800..9621589

Molecular Weight (calculated)

45051.9 Da

IEP (calculated)

5.091

GRAVY (calculated)

-0.009

Length

420 amino acids

Sequence
(BLAST)

001: MSLTLKISHI SNLSSDVFNT TVEPRIQCRA GQASVCFRRS PGFVSARIHW SSELSSRSFR ARCVGSDVVT REISGRSKDE TFSELEPELD GGDGGGGGDD
101: GGINGGNGGG GDGGGEGGDD GGEDEAEEKE FGPILKFDEV MKETERRGIA LPEDMLEAAK SVGIRKLFLL RYLDLQGSVW PLGFLMRTCT MLRNRMLADP
201: SFLFKVGTEI AIDSCCATFA EVQKRGEDFW SEFELYAADL LVGLVVDVAL VGLLAPYARI GKTSLPSSTG LFSGLKRSCA ALPSSVFEAE RPGCKFSVNQ
301: RVATFFYKGV LYGSVGFGCG LIGQGIANLI MTAKRSIKKS EEDVPVPPLF ESAALWGVFL GLSSNARYQI INGLERVVEG STAAKRIPVV AMAFTVGVRF
401: ANNVYGGMQF VDWAKLSGVQ

Best Arabidopsis Sequence Match ( AT5G22790.1 )
(BLAST)

001: MSISLKISHI SSFSNDGFNS VKQCRVSQRF EIRSVCFRRS PGVESRRIHL NSDLSSRNLR NRCVGSDVVT GEISGRSIPD WAYSGVKDET LSDLEPELDD
101: GDGGDENGNN DGGGNGGNGD GGGGGGDGEG DDGEDEADKA EEKEFGPILK FEEVMKETER RGITLPEDML EAAKSVGIRK LFLLRYLDLQ GSVWPLGFLM
201: RSCAMLRNRM LADPSFLFKV GTEVAIDSCC ATFAEVQKRG EDFWSEFELY AADLLVGLVV DVALVGLLAP YARIGKPSVA STGLFKDLKR ACASLPSSVF
301: EAERPGCKFS VNQRIATFFY KGLLYGSVGF GCGLIGQGIA NLIMTAKRSV KKSEEDVPIP PLFESAALWG VFLGLSSNAR YQIINGLERV VEGSTAAKRI
401: PVVAMAFTVG VRFANNVYGG MQFVDWAKLS GVQ

Arabidopsis Description

RER1Protein RETICULATA-RELATED 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FGP9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.