Factsheet for Bra029704.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35990	Canola	plastid	99.69	99.38
Bra040052.1-P	Field mustard	golgi, plasma membrane, plastid	59.5	77.64
AT3G08630.1	Thale cress	plastid	78.19	74.04
EES13002	Sorghum	mitochondrion, plastid	44.55	57.89
KRH09563	Soybean	plastid	57.01	57.19
VIT_08s0056g00560.t01	Wine grape	plastid	61.68	56.41
PGSC0003DMT400016786	Potato	plastid	60.44	54.65
Solyc09g031940.1.1	Tomato	plastid	60.75	54.62
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	47.66	52.76
Solyc10g074880.1.1	Tomato	plastid	58.88	52.65
Os01t0812900-01	Rice	plastid	57.01	52.59
PGSC0003DMT400071250	Potato	plastid	59.5	52.47
KXG33587	Sorghum	plastid	54.52	51.02
Zm00001d043119_P001	Maize	plastid	54.21	50.88
TraesCS3B01G368200.1	Wheat	golgi, plastid, unclear	54.83	50.43
TraesCS3A01G337100.1	Wheat	golgi, plastid, unclear	55.14	50.14
TraesCS3D01G330200.1	Wheat	plastid	55.45	50.14
Zm00001d012539_P001	Maize	extracellular, mitochondrion, plastid	53.27	49.85
GSMUA_Achr11P...	Banana	plastid	55.14	48.1
GSMUA_Achr8P01660_001	Banana	plastid	52.96	48.02
HORVU3Hr1G079620.1	Barley	mitochondrion, plastid	53.58	41.45
Bra008880.1-P	Field mustard	cytosol	23.68	27.05
Bra006164.1-P	Field mustard	plastid	27.73	23.55
Bra002429.1-P	Field mustard	plastid	26.17	20.0
Bra005154.1-P	Field mustard	plastid	26.17	19.86
Bra000024.1-P	Field mustard	plastid	24.92	18.78
Bra036522.1-P	Field mustard	plastid	22.43	13.85
Bra006636.1-P	Field mustard	plastid	23.99	13.12
Bra009789.1-P	Field mustard	plastid	21.5	13.04
Bra003229.1-P	Field mustard	plastid	25.86	11.2
Bra017008.1-P	Field mustard	plastid	25.23	10.9

Protein Annotations

EnsemblPlants:Bra029704.1	EnsemblPlants:Bra029704.1-P	EnsemblPlantsGene:Bra029704	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0009536	GO:GO:0016020	GO:GO:0016021	InterPro:RETICULATA-related	PANTHER:PTHR31620
PANTHER:PTHR31620:SF5	PFAM:PF11891	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002547DE1	UniProt:M4ELN6
MapMan:35.1	:	:	:	:	:

Description

AT3G08630 (E=8e-114) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: alphavirus core protein family (TAIR:AT3G08640.1); Has 3471 Blast hits to 1913 proteins in 226 species: Archae - 0; Bacteria - 450; Metazoa - 1700; Fungi - 130; Plants - 787; Viruses - 19; Other Eukaryotes - 385 (source: NCBI BLink).

Coordinates

chrA05:-:22586031..22586996

Molecular Weight (calculated)

33659.8 Da

IEP (calculated)

9.168

GRAVY (calculated)

0.142

Length

321 amino acids

Sequence
(BLAST)

001: MAAIARLHLS AKPNQTGPRA INLTRDPRII LSFPRNASVC SSLRTSPNLV ASSAGGGGSG GNGGVGGGDG GDDGDSGGKQ EPSPWGPIGM FIQGWRSRVA
101: ADPQFPFKVL MEELVGVTAN VLGDMASRPN FGLNELDFVF STLVVGSILN FTLMYLLAPS LASSTSSNLL PGIFKTCPAS HMFEQGSFTV VNRFGTLVYK
201: GMVFATVGLA AGLVGTAISN GLIMLRKKMD PGFEPPNKAP PTVLNSLTWA AHMGVSANVR YQTLNGVEFL MERGLPPLVF KTGVVALRVV NNLLGGMSFV
301: VLARLTGSQS VGEEKVEEKD D

Best Arabidopsis Sequence Match ( AT3G08630.1 )
(BLAST)

001: MAAMAAKLHI STKSDQSNVR LPRLINLSRD PTARVLFPRN GSVSSLHTNF SSPNIMVPCA GGGGGGSIGN HGGGSGSGGG GGGYGGSEEE ESSPWGPLGL
101: FIQGWRSRVA ADSQFPFKVL MEMLVGVSAN VLGDMASRPN FGLNELDFVF STLVVGSILN FTLMYLLAPS AISHGSSNLL PGIFRSCPSS HMFEQGNFTL
201: MNRFGTLVYK GMVFATVGLA AGLVGTAISN GLIMLRKKID PSFETPNKPP PTLLNSLTWA THMGVSANVR YQTLNGAEFL LEKSLPPLVF KTSVIALRVV
301: NNVLGGMSFV TLARMTGSQS VEEEKKIEMS EISEKEKED

Arabidopsis Description

RER2Protein RETICULATA-RELATED 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C9Z3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.