Factsheet for Bra040052.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, plastid

Predictor Summary:

cytosol 1
golgi 2
plastid 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane, plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	cytosol
MultiLoc:	golgi
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY66586	Canola	plastid	100.0	71.93
AT3G08640.1	Thale cress	plastid	83.33	60.83
Bra029704.1-P	Field mustard	plastid	77.64	59.5
EES13002	Sorghum	mitochondrion, plastid	56.5	56.28
KRH09563	Soybean	plastid	65.85	50.62
VIT_08s0056g00560.t01	Wine grape	plastid	71.95	50.43
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	58.54	49.66
PGSC0003DMT400016786	Potato	plastid	69.51	48.17
Solyc09g031940.1.1	Tomato	plastid	69.51	47.9
Os01t0812900-01	Rice	plastid	65.85	46.55
Solyc10g074880.1.1	Tomato	plastid	67.48	46.24
KXG33587	Sorghum	plastid	64.23	46.06
Zm00001d043119_P001	Maize	plastid	63.82	45.91
Zm00001d012539_P001	Maize	extracellular, mitochondrion, plastid	63.41	45.48
PGSC0003DMT400071250	Potato	plastid	67.07	45.33
TraesCS3A01G337100.1	Wheat	golgi, plastid, unclear	64.23	44.76
TraesCS3B01G368200.1	Wheat	golgi, plastid, unclear	63.41	44.7
TraesCS3D01G330200.1	Wheat	plastid	64.23	44.51
GSMUA_Achr11P...	Banana	plastid	64.23	42.93
GSMUA_Achr8P01660_001	Banana	plastid	60.98	42.37
HORVU3Hr1G079620.1	Barley	mitochondrion, plastid	63.01	37.35
Bra008880.1-P	Field mustard	cytosol	31.3	27.4
Bra006164.1-P	Field mustard	plastid	30.49	19.84
Bra002429.1-P	Field mustard	plastid	27.64	16.19
Bra005154.1-P	Field mustard	plastid	27.24	15.84
Bra000024.1-P	Field mustard	plastid	26.83	15.49
Bra006636.1-P	Field mustard	plastid	28.05	11.75
Bra036522.1-P	Field mustard	plastid	21.54	10.19
Bra009789.1-P	Field mustard	plastid	21.54	10.02
Bra003229.1-P	Field mustard	plastid	27.64	9.18
Bra017008.1-P	Field mustard	plastid	26.02	8.61

Protein Annotations

MapMan:35.1	EnsemblPlantsGene:Bra040052	EnsemblPlants:Bra040052.1	EnsemblPlants:Bra040052.1-P	GO:GO:0000003	GO:GO:0000302
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006950	GO:GO:0007275
GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009628	GO:GO:0009648	GO:GO:0009790
GO:GO:0009791	GO:GO:0009793	GO:GO:0009941	GO:GO:0016020	GO:GO:0016021	GO:GO:0048366
UniProt:M4FG27	PFAM:PF11891	PANTHER:PTHR31620	PANTHER:PTHR31620:SF5	InterPro:RETICULATA-related	TMHMM:TMhelix
UniParc:UPI0002544581	SEG:seg	:	:	:	:

Description

AT3G08640 (E=3e-111) | alphavirus core protein family

Coordinates

chrA01:-:27761211..27761951

Molecular Weight (calculated)

26710.0 Da

IEP (calculated)

9.236

GRAVY (calculated)

0.309

Length

246 amino acids

Sequence
(BLAST)

001: MFIEGWRSRV SADPQFPFKV LMEELVGVTA CVLGDMASRP NFGLNELDFV FSTLVVGSIL NFMLMYLLAP TSATAGVSQR LPGIFRNCPS GHMFEQGGFT
101: VMNRFGTLVY KGMVFATVGL AAGLVGTAIS NGLIMLRKKM DPGFETPNKP PPTVLNSLTW ATHMGVSANV RYQTLNGVEF LLARAMPPVV FKTSVFVLRC
201: VNNVVGGMSF VLLARMTGSQ SVEGKSEVGV EEEKTKTEIH VKVKDV

Best Arabidopsis Sequence Match ( AT3G08640.1 )
(BLAST)

001: MAAMAAKLQL SAKSDQSSVR LPRVINLSRD PTTRVSFPRN GSVCSLHTNF SSPHLAKPCA GGGGGGSTGN NGGGSGSGGG GGGFGGSGGE ASEESSPWGP
101: IGLFIQGWRS RVAADPQFPF KVLMEEIVGL SACVLGDMAS RPNFGLNELD FVFSTLVVGS ILNFVLMYML APTAATLGSS QTLPGIFRNC PSSHMFEQGS
201: FTVMNRFGTL VYKGMVFASV GLAAGLVGTA ISNGLIMLRK KMDPSFETPN KPPPTVLNSL TWATHMGVSA NARYQTLNGI EFLLAKVLPP LVFKTSVIVL
301: RCANNVAGGM SFVLLARMTG SQSVEEKTEI SEKEKDD

Arabidopsis Description

RER3Protein RETICULATA-RELATED 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C9Z2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.