Factsheet for Zm00001d043119_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22065420
plastid: 23198870
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG33587	Sorghum	plastid	94.15	93.88
Zm00001d012539_P001	Maize	extracellular, mitochondrion, plastid	88.89	88.63
EES13002	Sorghum	mitochondrion, plastid	60.82	84.21
Os01t0812900-01	Rice	plastid	81.58	80.17
TraesCS3B01G368200.1	Wheat	golgi, plastid, unclear	80.12	78.51
TraesCS3A01G337100.1	Wheat	golgi, plastid, unclear	80.12	77.62
TraesCS3D01G330200.1	Wheat	plastid	80.41	77.46
HORVU3Hr1G079620.1	Barley	mitochondrion, plastid	79.24	65.3
Bra040052.1-P	Field mustard	golgi, plasma membrane, plastid	45.91	63.82
PGSC0003DMT400016786	Potato	plastid	58.48	56.34
Solyc09g031940.1.1	Tomato	plastid	58.48	56.02
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	46.78	55.17
CDY27990	Canola	plastid	51.17	54.52
CDY35990	Canola	plastid	51.17	54.35
Bra029704.1-P	Field mustard	plastid	50.88	54.21
VIT_08s0056g00560.t01	Wine grape	plastid	55.56	54.13
KRH00511	Soybean	endoplasmic reticulum	54.39	53.6
AT3G08640.1	Thale cress	plastid	52.63	53.41
KRH40643	Soybean	mitochondrion	54.09	53.01
CDY22156	Canola	plastid	52.34	52.49
AT3G08630.1	Thale cress	plastid	51.75	52.21
KRH09563	Soybean	plastid	48.83	52.19
PGSC0003DMT400071250	Potato	plastid	54.97	51.65
Solyc10g074880.1.1	Tomato	plastid	54.09	51.53
CDY66586	Canola	plastid	51.46	51.46
GSMUA_Achr11P...	Banana	plastid	53.8	50.0
GSMUA_Achr8P01660_001	Banana	plastid	48.54	46.89
Zm00001d038085_P001	Maize	plastid	25.15	22.22
Zm00001d042050_P001	Maize	plastid	24.27	20.0
Zm00001d002980_P001	Maize	plastid	22.22	19.0
Zm00001d019249_P002	Maize	mitochondrion, plastid	23.1	17.79
Zm00001d041036_P001	Maize	cytosol	14.62	14.53
Zm00001d023791_P002	Maize	plasma membrane	21.64	13.78
Zm00001d043023_P002	Maize	plastid	23.98	11.11
Zm00001d010606_P004	Maize	plastid	19.59	10.42

Protein Annotations

EMBL:BT067097	EnsemblPlants:Zm00001d043119_P001	EnsemblPlants:Zm00001d043119_T001	EnsemblPlantsGene:Zm00001d043119	EntrezGene:100383393	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	InterPro:RETICULATA-related	PANTHER:PTHR31620	PANTHER:PTHR31620:SF5	PFAM:PF11891
ProteinID:ONM37052.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI000195CA4C	UniProt:C0PFM8	MapMan:35.1

Description

Protein RETICULATA-RELATED 3 chloroplastic

Coordinates

chr3:+:189711532..189712560

Molecular Weight (calculated)

35141.6 Da

IEP (calculated)

10.228

GRAVY (calculated)

0.217

Length

342 amino acids

Sequence
(BLAST)

001: MATTAFAAAR FFPAHLDSSP RIAPHRVGPT ANLSFSPLSA NSSSLRRLHS PCPSGPGGRL PPPPRSYGGA GGSGDAANSG GGEGRRGGIL GLLLAGWAAR
101: VAADPQFPFK VLMEELVGVT ACVLGDMASR PNFGLNELDF VFSTLVVGSI LNFVLMYLLA PTAGVAAAAS SAASALPSHM FEPGAYSLGS RVATIMSKGA
201: TFAVVGFAAG LTGTAISNGL IAMRKRMDPA FETPNKPPPT LLNAATWALH MGVSSNLRYQ TLNGIEYLLG KVAPAPVFKV SVVALRCMNN VLGGMSFVLL
301: ARLTGAQKSD KPATVAEEKE RLIAVGNAAA DAINEARHGE GK

Best Arabidopsis Sequence Match ( AT3G08640.1 )
(BLAST)

001: MAAMAAKLQL SAKSDQSSVR LPRVINLSRD PTTRVSFPRN GSVCSLHTNF SSPHLAKPCA GGGGGGSTGN NGGGSGSGGG GGGFGGSGGE ASEESSPWGP
101: IGLFIQGWRS RVAADPQFPF KVLMEEIVGL SACVLGDMAS RPNFGLNELD FVFSTLVVGS ILNFVLMYML APTAATLGSS QTLPGIFRNC PSSHMFEQGS
201: FTVMNRFGTL VYKGMVFASV GLAAGLVGTA ISNGLIMLRK KMDPSFETPN KPPPTVLNSL TWATHMGVSA NARYQTLNGI EFLLAKVLPP LVFKTSVIVL
301: RCANNVAGGM SFVLLARMTG SQSVEEKTEI SEKEKDD

Arabidopsis Description

RER3Protein RETICULATA-RELATED 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C9Z2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.