Factsheet for Zm00001d042050_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
extracellular: 20408568
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG34151	Sorghum	plastid	80.24	79.67
GSMUA_Achr8P00440_001	Banana	cytosol, plasma membrane, plastid	36.63	71.03
Os01t0957200-01	Rice	plastid	64.58	68.89
Bra008880.1-P	Field mustard	cytosol	46.02	67.97
Zm00001d038085_P001	Maize	plastid	59.04	63.31
HORVU3Hr1G109880.1	Barley	plastid	57.83	61.7
GSMUA_Achr8P08530_001	Banana	plastid	53.01	58.51
CDX97204	Canola	plastid	52.29	58.02
CDX70479	Canola	plastid	51.81	57.33
CDY53965	Canola	plastid	52.29	57.26
KRH24069	Soybean	endoplasmic reticulum, mitochondrion	50.12	57.14
CDX78491	Canola	plastid	51.57	56.91
KRH29040	Soybean	endoplasmic reticulum	50.36	56.79
Bra006164.1-P	Field mustard	plastid	51.57	56.61
AT5G12470.1	Thale cress	plastid	49.88	53.63
PGSC0003DMT400082409	Potato	plastid	51.81	52.31
Solyc11g065490.1.1	Tomato	plastid	51.81	52.06
Zm00001d002980_P001	Maize	plastid	24.34	25.25
Zm00001d012539_P001	Maize	extracellular, mitochondrion, plastid	20.48	24.78
Zm00001d043119_P001	Maize	plastid	20.0	24.27
Zm00001d019249_P002	Maize	mitochondrion, plastid	24.34	22.75
Zm00001d041036_P001	Maize	cytosol	14.7	17.73
Zm00001d043023_P002	Maize	plastid	29.16	16.4
Zm00001d023791_P002	Maize	plasma membrane	20.48	15.83
Zm00001d010606_P004	Maize	plastid	24.34	15.71

Protein Annotations

EnsemblPlants:Zm00001d042050_P001	EnsemblPlants:Zm00001d042050_T001	EnsemblPlantsGene:Zm00001d042050	InterPro:RETICULATA-related	PANTHER:PTHR31620	PANTHER:PTHR31620:SF8
PFAM:PF11891	ProteinID:ONM34378.1	SEG:seg	UniParc:UPI000220F52D	UniProt:A0A1D6N0R5	MapMan:35.1

Description

Protein RETICULATA-RELATED 4 chloroplastic

Coordinates

chr3:-:148701826..148704925

Molecular Weight (calculated)

43890.8 Da

IEP (calculated)

6.352

GRAVY (calculated)

0.087

Length

415 amino acids

Sequence
(BLAST)

001: MALPPSSSPS SLSAASAQPT PLHLHLPTKA PGRLPLLPFS RAALPPPLRL RIARTSLSPG TPLPRALLPP PSASADAAAS DVGGGGAGFG GHDDDGHNHH
101: GGEGGGDDGG HGDDAGHGDD APGGGDARGE ALFVLAQLGR KLDSLPSDLA AAVDSGRIGA DIVRRFTELE ANGFFRWLLQ FQGFRERLLA DELFLTKLGI
201: ECGIGLVAKT VAEFQKRGDN FFKEIEVVIS DVVMAIVADV MLVYLPAPTI GLQPPLARNA GAIANFFYNC PDNTFQIAMA GRSFSLLQRI GAFVRNGIKL
301: LAVGTTASLI GTSVTNAALK AKRAVDKDLE DEVMEIPVVS TSVAYGVYMS ISSNLRYQLL AGVIEQRMLE PLLHNQKLLL SAMCFIVRTG NTFLGSLLWV
401: DYARWIGVQK SHEEA

Best Arabidopsis Sequence Match ( AT5G12470.1 )
(BLAST)

001: MAIASCFFCV PTPNTAISES NLTWPHIASF PRLSSSSSFN GVISAKSISF NRRVPITPVL SASSGNGGSD NNGGGLSGGG GGGDGGKNDG DGHGDEDRDR
101: NRNEAMLLLK ESGIELESLP KDLAAAIEAG RIPGSVITRF LELQKSAVMR WLMQFGGFRE RLLADDLFMA KLAMECGVGI FTKTAAEYER RRENFFNELE
201: VVFADVAMAI IADFMLVYLP APTVSLRPPL ALTAGGISKF FHNCPDNAFQ VALSGTSYTL LQRLGAITRN GAKLFAVGTT SSLVGTAITN AFIKARKAVD
301: QNSEGEVETV PIVSTSVAYG VYMAVSSNLR YQIVAGVIEQ RLLEPMLHQH KLALSALCFA VRTGNTFLGS LLWVDYARLI GIQKSH

Arabidopsis Description

RER4Protein RETICULATA-RELATED 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94CJ5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.