Factsheet for Zm00001d010606_P004

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG22205	Sorghum	plastid	91.91	79.65
Zm00001d043023_P002	Maize	plastid	71.23	62.06
TraesCS1A01G298100.1	Wheat	plastid	70.3	61.75
TraesCS1D01G293100.1	Wheat	plastid	70.76	61.74
TraesCS1B01G307600.1	Wheat	plastid	70.45	61.55
GSMUA_Achr6P35670_001	Banana	plastid	61.9	56.14
GSMUA_AchrUn_...	Banana	plastid	65.16	55.87
VIT_13s0067g02090.t01	Wine grape	mitochondrion, plastid	60.03	51.54
CDX93185	Canola	plastid	56.61	49.46
Solyc06g050620.2.1	Tomato	mitochondrion	57.39	49.4
AT2G40400.1	Thale cress	plastid	56.45	49.39
CDY31998	Canola	plastid	56.92	49.26
PGSC0003DMT400061517	Potato	mitochondrion	57.08	49.13
Bra003229.1-P	Field mustard	plastid	56.45	48.99
CDX67635	Canola	plastid	56.45	48.86
KRH31203	Soybean	plastid	56.77	48.8
KRG97671	Soybean	plastid	56.61	48.73
AT3G56140.1	Thale cress	plastid	56.45	48.72
CDY52926	Canola	plastid	56.3	48.72
Bra017008.1-P	Field mustard	plastid	56.3	48.72
HORVU1Hr1G070330.11	Barley	cytosol	72.94	39.08
Zm00001d038085_P001	Maize	plastid	16.33	27.13
Zm00001d042050_P001	Maize	plastid	15.71	24.34
Zm00001d043119_P001	Maize	plastid	10.42	19.59
Zm00001d002980_P001	Maize	plastid	11.98	19.25
Zm00001d012539_P001	Maize	extracellular, mitochondrion, plastid	10.26	19.24
Zm00001d023791_P002	Maize	plasma membrane	14.31	17.13
Zm00001d019249_P002	Maize	mitochondrion, plastid	11.82	17.12
Zm00001d041036_P001	Maize	cytosol	8.71	16.28

Protein Annotations

EnsemblPlants:Zm00001d010606_P004	EnsemblPlants:Zm00001d010606_T004	EnsemblPlantsGene:Zm00001d010606	Gene3D:3.40.50.11550	InterPro:Cofac_haem-bd_dom	InterPro:RETICULATA-related
PANTHER:PTHR31620	PANTHER:PTHR31620:SF6	PFAM:PF04187	PFAM:PF11891	ProteinID:AQK94446.1	SEG:seg
SUPFAM:SSF159501	UniParc:UPI0008446C3A	UniProt:A0A1D6FSB0	MapMan:35.1	:	:

Description

Protein RETICULATA-RELATED 6 chloroplastic

Coordinates

chr8:+:121735929..121745339

Molecular Weight (calculated)

70076.8 Da

IEP (calculated)

6.539

GRAVY (calculated)

-0.129

Length

643 amino acids

Sequence
(BLAST)

001: MLSHAPSQIP AASKPRLSSR RRSSRLGAKH LTATAAAAST LRSVSASRRG FVLFVPSLAA ASAVLRPLPS AATEADDTES PAPHPPPTEE SLSPQPAADA
101: AETKPEASES AMSRVYDATV LGEPEALAGD ARGRVWEKLA AARVVYLGEA ELEPDPDDRV VELEIVRGLA GRCADAGRGL ALALEAFPCD LQQQLDQFMD
201: GRIDGGILKL YTSHWSQELW QEYEPLLCYC RDTGIKLIAC GTPLEVKRTV QADGIRALKK AEREAYAPPA GSGFISSFMF GSGRSLIDKI SSIDDSMFGS
301: TSYLSEQARV VDDYTISQVI TRELSDGDVS RLLIVVTGAS HVMYGPRGSG VPGRISKKVP KKDQVVVLLD PERQVIRREG EVPIADFLWY SAAKPCTRNC
401: FDRAEIARVM NAAGRRPEAL PQDLQKGLDL GVVSPEILQN FFDLEKYPVM TELIHRFQGF RERLLADPKF LQRLAIEEVI SITTTLLAQY ERRKGRFFEE
501: IDYVLTDTIR GSVVDFFTVW LPAPTISVLQ YADDGSGSSL EFVKGLLGSL PDNAFQKNIL GQDWSIKQRI AAVLVGGLKL ASVGFISSVG AGVSSDLIYA
601: ARGIVKPSEN VETGRKRSPI WKSAAVYSCF LGTSANLRYQ KLY

Best Arabidopsis Sequence Match ( AT2G40400.1 )
(BLAST)

001: MKPTTNGGLL ASQSSSSFSF PRFRGQLPII FSANNNQKKK NLPNPNVVTL CLHSHSNVSS SQIAVTRRAI LVAPPLLAAA ASLFLSISSA ASAETSAESV
101: ALPPVATAPP PPPVEKEEAI TSRIYDASVL GEPMAVGKDK KRVWEKLLNA RIVYLGEAEQ VPTRDDKVLE LEIVRNLRKR CIESDRQLSL ALEAFPLDLQ
201: EQLNQYMDKR MDGEVLKSYV SHWPVQRWQE YEPLLSYCRD NGVKLIACGT PLKVLRTVQA EGIRGLSESE RKLYTPPAGS GFISGFTSFS RSSSLNMNPL
301: TQIVPFGPSS YLSAQARVVE DHTMSQVIVQ AVADGGGTGM LVVVTGANHV EYGSRGTGLP ARISRKIPKK SQLVVLLDPE RQFLRKEGES PVADFLWYSA
401: ARPCSRNCFD RAEIARVMNA AGRRRDALPQ DIQKGLDLGL VSPEILQNFF DLEQYPLISE LTQRFQGFRE RLLADPKFLN RLAIEEAISI TTTLVAQYEK
501: RKENFFEELD YVITDSVRAS VVDFFTVWLP APTLSFISYA DETIGPNSID ALRGLLGSIP DNAFQKSLGG QEWTLSLRIA SVIIGGLKLA GVGVVSSFAA
601: VGSSNALYAI RKFIKPELGV GEQAKRSPML KTALVYGGYL GTSSNIRYQI IAGLIEHRIS DELSSQPLLV NMISFVVRVA NSYFGTQQWI DLARSTGLQT
701: QKSVTTSNQI PEVASQSTVE YSTTEEASMD DLKNQ

Arabidopsis Description

RER5Protein RETICULATA-RELATED 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SIY5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.