Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G307600.1 | Wheat | plastid | 96.17 | 95.65 |
| TraesCS1D01G293100.1 | Wheat | plastid | 95.9 | 95.25 |
| Zm00001d010606_P004 | Maize | plastid | 61.75 | 70.3 |
| KXG22205 | Sorghum | plastid | 69.54 | 68.6 |
| TraesCS3A01G347800.1 | Wheat | plastid | 67.08 | 68.19 |
| GSMUA_Achr6P35670_001 | Banana | plastid | 61.75 | 63.75 |
| GSMUA_AchrUn_... | Banana | plastid | 63.66 | 62.13 |
| Bra003229.1-P | Field mustard | plastid | 56.56 | 55.87 |
| CDY31998 | Canola | plastid | 56.69 | 55.85 |
| CDX67635 | Canola | plastid | 56.56 | 55.72 |
| AT3G56140.1 | Thale cress | plastid | 56.69 | 55.7 |
| VIT_13s0067g02090.t01 | Wine grape | mitochondrion, plastid | 56.83 | 55.54 |
| KRG97671 | Soybean | plastid | 56.01 | 54.89 |
| AT2G40400.1 | Thale cress | plastid | 55.05 | 54.83 |
| KRH31203 | Soybean | plastid | 55.87 | 54.68 |
| CDX93185 | Canola | plastid | 54.92 | 54.62 |
| Solyc06g050620.2.1 | Tomato | mitochondrion | 55.46 | 54.35 |
| Bra017008.1-P | Field mustard | plastid | 55.05 | 54.24 |
| PGSC0003DMT400061517 | Potato | mitochondrion | 55.33 | 54.22 |
| CDY52926 | Canola | plastid | 54.78 | 53.97 |
| HORVU1Hr1G070330.11 | Barley | cytosol | 84.02 | 51.25 |
| TraesCS1A01G242600.1 | Wheat | plastid | 16.26 | 30.99 |
| TraesCS2A01G377800.1 | Wheat | plastid | 13.39 | 25.0 |
| TraesCS3A01G337100.1 | Wheat | golgi, plastid, unclear | 11.89 | 24.65 |
| TraesCS5A01G110400.1 | Wheat | plastid | 15.3 | 21.01 |
| TraesCS2A01G234300.1 | Wheat | mitochondrion, plastid | 12.16 | 20.89 |
| TraesCS7A01G335500.1 | Wheat | plastid | 13.39 | 19.8 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G298100.1 | EnsemblPlantsGene:TraesCS1A01G298100 | Gene3D:3.40.50.11550 | InterPro:Cofac_haem-bd_dom | InterPro:IPR006311 | InterPro:RETICULATA-related |
| InterPro:TAT_signal | PANTHER:PTHR31620 | PANTHER:PTHR31620:SF6 | PFAM:PF04187 | PFAM:PF11891 | PFscan:PS51318 |
| SEG:seg | SUPFAM:SSF159501 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr1A:+:493211657..493216345
Molecular Weight (calculated)
79510.8 Da
IEP (calculated)
8.843
GRAVY (calculated)
-0.252
Length
732 amino acids
Sequence
(BLAST)
(BLAST)
001: MSHAPLRNAA ASFKPLLPSP RSRLSTKPLN SGAAPSPRRS VSASASSRRD FLLLIPSLAA ASAVLRAPPA AAADDQASPP SPPAESPAPA PPPPTKEKEP
101: EGDESAVSRV YDATVIGEPQ AVGREAKGRV WDKLAAARVV YLGEAELVPD PDDRVLELEI VTKLAARCAD AQRRMSLALE AFPCDLQQQL DDFMRGRIDG
201: SILKLYTSHW PSERWKEYEP LLNFCRDKGI KLVATGTPLQ VKRTVQAEGI GGLSKAERKE YAPPAGSGFI SGFRSGRSFI ENITSTRDSP FGPNSYLSAQ
301: ARVVDDYTMS QIIMKELNGK DPPGILIVVA GASHLIYGSR GTGVPARVSK KLPKKDHVVV LLDPERQSIR REGQIPVADF LWYSAAKICS RNCFDRAEIA
401: RVMNAAGRRP EALPQDLQKG IDLGVVSPEI LQNFFDLDKN PVMTELIHRF QGFRERLLAD PKFLQRLAIE EAISISTTLL AQYERRKGRF FEEIDYVLTD
501: TIRGSVVDFF TVWLPAPTIS VLSFTDDDSG QSLGFVKGLL GSLPDNAFQK NTFGRNWNMN QRVAAVIVGG LKLAGVGFIS GVGAGVSSDL LYAARGLLKP
601: SASVGAGRKR APVLKSAAVY SCFLGTSANL RYQIIAGLLE HRLGESLATQ YNQPLLAGLL SFVARTVNSY LGTQQWVDLA RYTGVQKIQE QLPSDEVTTP
701: PETSQLEDGR TDVQNPDESS SSNADRSSDP TK
101: EGDESAVSRV YDATVIGEPQ AVGREAKGRV WDKLAAARVV YLGEAELVPD PDDRVLELEI VTKLAARCAD AQRRMSLALE AFPCDLQQQL DDFMRGRIDG
201: SILKLYTSHW PSERWKEYEP LLNFCRDKGI KLVATGTPLQ VKRTVQAEGI GGLSKAERKE YAPPAGSGFI SGFRSGRSFI ENITSTRDSP FGPNSYLSAQ
301: ARVVDDYTMS QIIMKELNGK DPPGILIVVA GASHLIYGSR GTGVPARVSK KLPKKDHVVV LLDPERQSIR REGQIPVADF LWYSAAKICS RNCFDRAEIA
401: RVMNAAGRRP EALPQDLQKG IDLGVVSPEI LQNFFDLDKN PVMTELIHRF QGFRERLLAD PKFLQRLAIE EAISISTTLL AQYERRKGRF FEEIDYVLTD
501: TIRGSVVDFF TVWLPAPTIS VLSFTDDDSG QSLGFVKGLL GSLPDNAFQK NTFGRNWNMN QRVAAVIVGG LKLAGVGFIS GVGAGVSSDL LYAARGLLKP
601: SASVGAGRKR APVLKSAAVY SCFLGTSANL RYQIIAGLLE HRLGESLATQ YNQPLLAGLL SFVARTVNSY LGTQQWVDLA RYTGVQKIQE QLPSDEVTTP
701: PETSQLEDGR TDVQNPDESS SSNADRSSDP TK
001: MKPTTNGGLL ASQSSSSFSF PRFRGQLPII FSANNNQKKK NLPNPNVVTL CLHSHSNVSS SQIAVTRRAI LVAPPLLAAA ASLFLSISSA ASAETSAESV
101: ALPPVATAPP PPPVEKEEAI TSRIYDASVL GEPMAVGKDK KRVWEKLLNA RIVYLGEAEQ VPTRDDKVLE LEIVRNLRKR CIESDRQLSL ALEAFPLDLQ
201: EQLNQYMDKR MDGEVLKSYV SHWPVQRWQE YEPLLSYCRD NGVKLIACGT PLKVLRTVQA EGIRGLSESE RKLYTPPAGS GFISGFTSFS RSSSLNMNPL
301: TQIVPFGPSS YLSAQARVVE DHTMSQVIVQ AVADGGGTGM LVVVTGANHV EYGSRGTGLP ARISRKIPKK SQLVVLLDPE RQFLRKEGES PVADFLWYSA
401: ARPCSRNCFD RAEIARVMNA AGRRRDALPQ DIQKGLDLGL VSPEILQNFF DLEQYPLISE LTQRFQGFRE RLLADPKFLN RLAIEEAISI TTTLVAQYEK
501: RKENFFEELD YVITDSVRAS VVDFFTVWLP APTLSFISYA DETIGPNSID ALRGLLGSIP DNAFQKSLGG QEWTLSLRIA SVIIGGLKLA GVGVVSSFAA
601: VGSSNALYAI RKFIKPELGV GEQAKRSPML KTALVYGGYL GTSSNIRYQI IAGLIEHRIS DELSSQPLLV NMISFVVRVA NSYFGTQQWI DLARSTGLQT
701: QKSVTTSNQI PEVASQSTVE YSTTEEASMD DLKNQ
101: ALPPVATAPP PPPVEKEEAI TSRIYDASVL GEPMAVGKDK KRVWEKLLNA RIVYLGEAEQ VPTRDDKVLE LEIVRNLRKR CIESDRQLSL ALEAFPLDLQ
201: EQLNQYMDKR MDGEVLKSYV SHWPVQRWQE YEPLLSYCRD NGVKLIACGT PLKVLRTVQA EGIRGLSESE RKLYTPPAGS GFISGFTSFS RSSSLNMNPL
301: TQIVPFGPSS YLSAQARVVE DHTMSQVIVQ AVADGGGTGM LVVVTGANHV EYGSRGTGLP ARISRKIPKK SQLVVLLDPE RQFLRKEGES PVADFLWYSA
401: ARPCSRNCFD RAEIARVMNA AGRRRDALPQ DIQKGLDLGL VSPEILQNFF DLEQYPLISE LTQRFQGFRE RLLADPKFLN RLAIEEAISI TTTLVAQYEK
501: RKENFFEELD YVITDSVRAS VVDFFTVWLP APTLSFISYA DETIGPNSID ALRGLLGSIP DNAFQKSLGG QEWTLSLRIA SVIIGGLKLA GVGVVSSFAA
601: VGSSNALYAI RKFIKPELGV GEQAKRSPML KTALVYGGYL GTSSNIRYQI IAGLIEHRIS DELSSQPLLV NMISFVVRVA NSYFGTQQWI DLARSTGLQT
701: QKSVTTSNQI PEVASQSTVE YSTTEEASMD DLKNQ
Arabidopsis Description
RER5Protein RETICULATA-RELATED 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SIY5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.