CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017008.1-P	Field mustard	plastid	99.33	99.33
CDX93185	Canola	plastid	95.83	96.74
AT2G40400.1	Thale cress	plastid	86.0	86.94
CDX67635	Canola	plastid	78.47	78.47
CDY31998	Canola	plastid	77.39	77.39
HORVU5Hr1G020100.2	Barley	cytosol	20.59	65.11
VIT_13s0067g02090.t01	Wine grape	mitochondrion, plastid	65.41	64.89
PGSC0003DMT400061517	Potato	mitochondrion	63.12	62.78
Solyc06g050620.2.1	Tomato	mitochondrion	62.58	62.25
KRG97671	Soybean	plastid	61.64	61.31
GSMUA_Achr6P35670_001	Banana	plastid	58.01	60.79
KRH31203	Soybean	plastid	61.1	60.7
TraesCS3D01G341400.1	Wheat	plastid	56.93	58.75
TraesCS3A01G347800.1	Wheat	plastid	56.93	58.75
TraesCS3B01G379700.2	Wheat	mitochondrion, plastid	56.93	58.67
EES03820	Sorghum	mitochondrion	56.93	57.63
GSMUA_AchrUn_...	Banana	plastid	57.87	57.33
Zm00001d043023_P002	Maize	plastid	56.8	57.18
HORVU3Hr1G088220.12	Barley	mitochondrion, plastid	56.12	56.97
Zm00001d010606_P004	Maize	plastid	48.72	56.3
Os01t0826900-01	Rice	cytosol, endoplasmic reticulum, plastid	56.12	55.82
TraesCS1D01G293100.1	Wheat	plastid	54.64	55.09
TraesCS1A01G298100.1	Wheat	plastid	53.97	54.78
TraesCS1B01G307600.1	Wheat	plastid	54.1	54.62
KXG22205	Sorghum	plastid	53.16	53.23
HORVU1Hr1G070330.11	Barley	cytosol	53.97	33.42
CDX97204	Canola	plastid	15.21	30.21
CDX70479	Canola	plastid	14.94	29.6
CDY53965	Canola	plastid	15.07	29.55
CDX78491	Canola	plastid	14.8	29.26
CDY35990	Canola	plastid	10.9	25.16
CDY27990	Canola	plastid	10.63	24.61
CDX74930	Canola	plastid	13.59	23.88
CDY22156	Canola	plastid	10.9	23.75
CDY26956	Canola	plastid	13.32	23.52
CDY66586	Canola	plastid	10.77	23.39
CDX91387	Canola	plastid	13.32	23.35
CDX92336	Canola	plastid	12.92	22.7
CDY07766	Canola	plastid	12.52	22.46
CDY59488	Canola	plastid	12.52	22.2
CDX80466	Canola	plastid	14.0	19.73
CDX87117	Canola	plastid	13.59	19.2
CDX88782	Canola	plastid	13.73	17.65
CDX71014	Canola	plastid	13.73	17.26
CDX88129	Canola	cytosol	14.54	6.24
CDY67668	Canola	mitochondrion	0.94	4.14

Protein Annotations

EnsemblPlants:CDY52926	EnsemblPlantsGene:GSBRNA2T00008109001	Gene3D:3.40.50.11550	InterPro:Cofac_haem-bd_dom	InterPro:RETICULATA-related	ncoils:Coil
PANTHER:PTHR31620	PANTHER:PTHR31620:SF2	PFAM:PF04187	PFAM:PF11891	ProteinID:CDY52926	ProteinID:CDY52926.1
SEG:seg	SUPFAM:SSF159501	UniParc:UPI0004EE61C8	UniProt:A0A078ISX8	MapMan:35.1	:

Description

BnaA04g29330DBnaA04g29330D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ISX8]

Coordinates

chrLK033142:+:47397..51448

Molecular Weight (calculated)

81659.5 Da

IEP (calculated)

7.629

GRAVY (calculated)

-0.187

Length

743 amino acids

Sequence
(BLAST)

001: MKPTTNGLFA SQSSPSFTAP RFRGHLPITF TSSNHHHHHH KNKKNLANVI TLSLPSDDSS SSSRVTSSRR AILVAPPLLA AVISLWPSVS SAAGEISSIV
101: AADASPEPAA PPPPATPSPV EEITSRIYDA TALGEPMAVG KDKKRVWEKL LNARIVYLGE AEQVPTRDDK DLELEIVRNL RKRCVESERQ LSLALEAFPV
201: DLQEQLNQYM DKRMDGEALK SYVSHWPAQR WQEYEPLLTY CRENAVKLIA CGTPLKVLRT VQAEGIRGLS ESERRLYTPP AGSGFISGFT PFSRNSSLNI
301: NPLTQIVPFG PSSYLSAQAR VVEDHTMSQV ILQAVADGGG TGLLLVVTGA NHVEYGSRGT GLPARVSRKI PKKSQLVVLL DPERQFLRKE GESPVADFLW
401: YSAARPCSRN CFDRAEIARV MNAAGRSRDA LPQDIQKGLD LGLVSPEILQ NLFDLEQYPL IAELTQRFQG FRERLLADPK FLNRLAIEEA ISITTTLVAQ
501: YEKRKENFFE ELDYVITDSV RASVVDFFTV WLPAPTLSFL SYADETARPN SIDALRGLLG SIPDNAFQKS LGGKDWTLNL RIASVIVGGL KLAGVGVVSS
601: FAAVGSSNAL YAIRKFIKPE LAVSEQTKRS PMLKTAVVYG GYLGTSSNIR YQIIAGLIEH RISDELSSQP LLVNMISFVV RVANSYYGTQ QWIDLARSTG
701: LQAQKSVTAS NQIPEALSQP TVEIVEYSTT TTDEATMDDL KNQ

Best Arabidopsis Sequence Match ( AT2G40400.1 )
(BLAST)

001: MKPTTNGGLL ASQSSSSFSF PRFRGQLPII FSANNNQKKK NLPNPNVVTL CLHSHSNVSS SQIAVTRRAI LVAPPLLAAA ASLFLSISSA ASAETSAESV
101: ALPPVATAPP PPPVEKEEAI TSRIYDASVL GEPMAVGKDK KRVWEKLLNA RIVYLGEAEQ VPTRDDKVLE LEIVRNLRKR CIESDRQLSL ALEAFPLDLQ
201: EQLNQYMDKR MDGEVLKSYV SHWPVQRWQE YEPLLSYCRD NGVKLIACGT PLKVLRTVQA EGIRGLSESE RKLYTPPAGS GFISGFTSFS RSSSLNMNPL
301: TQIVPFGPSS YLSAQARVVE DHTMSQVIVQ AVADGGGTGM LVVVTGANHV EYGSRGTGLP ARISRKIPKK SQLVVLLDPE RQFLRKEGES PVADFLWYSA
401: ARPCSRNCFD RAEIARVMNA AGRRRDALPQ DIQKGLDLGL VSPEILQNFF DLEQYPLISE LTQRFQGFRE RLLADPKFLN RLAIEEAISI TTTLVAQYEK
501: RKENFFEELD YVITDSVRAS VVDFFTVWLP APTLSFISYA DETIGPNSID ALRGLLGSIP DNAFQKSLGG QEWTLSLRIA SVIIGGLKLA GVGVVSSFAA
601: VGSSNALYAI RKFIKPELGV GEQAKRSPML KTALVYGGYL GTSSNIRYQI IAGLIEHRIS DELSSQPLLV NMISFVVRVA NSYFGTQQWI DLARSTGLQT
701: QKSVTTSNQI PEVASQSTVE YSTTEEASMD DLKNQ

Arabidopsis Description

RER5Protein RETICULATA-RELATED 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SIY5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.