Factsheet for HORVU3Hr1G088220.12

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
TargetP:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G341400.1	Wheat	plastid	94.13	95.69
TraesCS3A01G347800.1	Wheat	plastid	93.99	95.56
TraesCS3B01G379700.2	Wheat	mitochondrion, plastid	93.17	94.59
HORVU5Hr1G020100.2	Barley	cytosol	29.92	93.19
EES03820	Sorghum	mitochondrion	79.37	79.16
Zm00001d043023_P002	Maize	plastid	79.78	79.13
Os01t0826900-01	Rice	cytosol, endoplasmic reticulum, plastid	77.6	76.04
GSMUA_Achr6P35670_001	Banana	plastid	63.52	65.59
GSMUA_AchrUn_...	Banana	plastid	65.85	64.27
VIT_13s0067g02090.t01	Wine grape	mitochondrion, plastid	60.11	58.74
Solyc06g050620.2.1	Tomato	mitochondrion	59.29	58.1
PGSC0003DMT400061517	Potato	mitochondrion	59.15	57.97
AT2G40400.1	Thale cress	plastid	57.92	57.69
AT3G56140.1	Thale cress	plastid	58.33	57.32
Bra003229.1-P	Field mustard	plastid	57.79	57.09
CDX67635	Canola	plastid	57.92	57.07
CDX93185	Canola	plastid	57.38	57.07
KRG97671	Soybean	plastid	58.2	57.03
CDY31998	Canola	plastid	57.79	56.93
KRH31203	Soybean	plastid	58.06	56.82
CDY52926	Canola	plastid	56.97	56.12
Bra017008.1-P	Field mustard	plastid	56.97	56.12
HORVU1Hr1G070330.11	Barley	cytosol	65.98	40.25
HORVU0Hr1G000510.2	Barley	cytosol	9.97	32.02
HORVU3Hr1G109880.1	Barley	plastid	15.98	30.08
HORVU2Hr1G090260.1	Barley	plastid	13.52	24.26
HORVU3Hr1G079620.1	Barley	mitochondrion, plastid	12.7	22.41
HORVU2Hr1G049760.6	Barley	cytosol, peroxisome	10.66	21.91
HORVU7Hr1G082560.2	Barley	mitochondrion	11.75	20.53
HORVU5Hr1G030040.1	Barley	plastid	14.75	19.71

Protein Annotations

EnsemblPlants:HORVU3Hr1G088220.12	EnsemblPlantsGene:HORVU3Hr1G088220	Gene3D:3.40.50.11550	InterPro:Cofac_haem-bd_dom	InterPro:RETICULATA-related	PANTHER:PTHR31620
PANTHER:PTHR31620:SF6	PFAM:PF04187	PFAM:PF11891	SEG:seg	SUPFAM:SSF159501	UniParc:UPI000B487409
UniProt:A0A287M536	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chrchr3H:-:624122238..624128316

Molecular Weight (calculated)

79828.6 Da

IEP (calculated)

8.495

GRAVY (calculated)

-0.188

Length

732 amino acids

Sequence
(BLAST)

001: RSASSPRPPA RLRRRPCQGR MLPRAPSRCL GAAKFKPLVP AKPPLSPSSS SSSRGALCAA ASRRDFLLLV PSLAAASTAL QYLPLAASAA DDEKPAPPPP
101: PPPAEEPNGE AALSRMYDAT VIGEPQAVGK DARGRVWEKL MAARVVYLGE AELVPDRDDR VLELEIVRKL AARCADAGRS LSLSLEAFPC DLQEQLNHFI
201: HGRIDGSNLR SYTSHWAPER WQEYEPLLNY CRDNGIKLIA CGTPLEVVRT VQAEGIKGLS KEQRKLYAPP AGSGFISGFT SITGRSLIDK TSSSRVSPFG
301: PSSYLSAQAR VVDDYTMSQI IMKEISTGDP SGMLVVVTGA SHVMYGARGI GVPARISKKM QKKKQVVILL DPERQGIRRE GEIPVADLLW YSAAKPCSRN
401: CFDRAEIARV MNAAGRRREA LPQKGIDRGV VSPEILQNFF DLEKYPVVDE LIHRFQGFRE RLLADPQFLN RLAIEEGISI TTAVLAQYEK RKGRFFEEID
501: YVLTDTIRGS VVDFFTVWLP APTISLLSIA DNGSGESLEL VRGLLGSLPD NAFQKGIVGQ NWDINQRFAS VLVGGLKLAG VGFVSSIGAG VASDVLYAAR
601: RVLSPTSIEA ERPRAPIWKA ASVYSGFLGT SANLRYQVIA GLVEHRLGEY LVSYYNQPFL ANVLSFVARI INSYFGTQQW IDLARSTGIQ TSEEEPPSPD
701: TPISSEMPVL ECGTAEVPST DDVNKNQSGE QT

Best Arabidopsis Sequence Match ( AT3G56140.1 )
(BLAST)

001: MKLTTNDLFA SQPLFHCPCS SSSRPRRRRF YGLHFPINLT SEKNNSLSIV ALSDSDLPSR TAFSRRAFLL APPLLVSAAS LFLKPSVSLA SEESSSATVT
101: SPAESAAPPP PPATTTPSPP PPVNKEETIT SRIYDATAIG EPMAMGKDKK KVWEKLLNAR VVYLGEAEQV PTKDDKELEL EIVRNLRKRC VESERQISVA
201: LEAFPLDLQD QLNQYMDKRM DGETLKSYVT HWPAQRWQEY EPLLSYCRDN SVRLIACGTP LKVLRTVQAE GIRGLSKSER KLYTPPAGSG FISGFSSFSR
301: RSTFDMSLPT QIVPFGPSSY LSAQARVVED HTMSQVILQA VADGGGTGLL LVVTGASHVE YGSRGTGLPA RISRKFPKKN QVVVLLDPER QFLRREGETP
401: VADFLWYSAA RPCSRNCFDR AEIARVMNAA GRRRDALPPD IQNGLDLGLV SPEVLQNLFD LEQYPLISEL TQRFQGFRER LLADPKFLNR LAIEEAISIT
501: TTLIAQYEKR KENFFEEIDY VITDTVRGSV VDFFTVWLPA PTLSFLSYAD ETTGPDSIDA LRGLLGSIPD NAFQKSLAGR EWNLNLRIAS VIVGGLKLAG
601: VGVVSSFAAV GASNALNIAR KVIKPELVVA EKPKRSPLLK TAMVYGGFLG TSANLRYQII AGLIEHRLSD ELSSQPLLVN AISFVVRTLN SYFGTQQWID
701: LARSTGLQTQ KSIPASKEIS EALEEPTVEC DTTTEEESID KLNNQ

Arabidopsis Description

RER6Protein RETICULATA-RELATED 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8RWG3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.