Factsheet for HORVU0Hr1G000510.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, peroxisome
MultiLoc:	cytosol
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P00440_001	Banana	cytosol, plasma membrane, plastid	72.81	77.57
Bra008880.1-P	Field mustard	cytosol	71.05	57.65
TraesCS1B01G254100.1	Wheat	unclear	90.79	54.19
TraesCS1A01G242600.1	Wheat	plastid	89.91	53.39
TraesCS1D01G242600.1	Wheat	golgi	89.91	53.39
Os05t0388600-01	Rice	plasma membrane	84.21	50.79
Zm00001d038085_P001	Maize	plastid	79.82	47.03
GSMUA_Achr8P08530_001	Banana	plastid	75.44	45.74
EES18163	Sorghum	plastid	78.95	43.58
CDX97204	Canola	plastid	71.49	43.58
KRH24069	Soybean	endoplasmic reticulum, mitochondrion	69.3	43.41
HORVU3Hr1G109880.1	Barley	plastid	73.68	43.19
CDY53965	Canola	plastid	71.05	42.74
CDX70479	Canola	plastid	70.18	42.67
AT5G12470.1	Thale cress	plastid	71.93	42.49
CDX78491	Canola	plastid	69.74	42.29
Bra006164.1-P	Field mustard	plastid	69.74	42.06
KRH29040	Soybean	endoplasmic reticulum	67.54	41.85
PGSC0003DMT400082409	Potato	plastid	70.18	38.93
Solyc11g065490.1.1	Tomato	plastid	69.74	38.5
HORVU2Hr1G049760.6	Barley	cytosol, peroxisome	25.44	16.29
HORVU2Hr1G090260.1	Barley	plastid	28.07	15.69
HORVU3Hr1G079620.1	Barley	mitochondrion, plastid	24.56	13.49
HORVU7Hr1G082560.2	Barley	mitochondrion	21.05	11.46
HORVU3Hr1G088220.12	Barley	mitochondrion, plastid	32.02	9.97
HORVU5Hr1G030040.1	Barley	plastid	19.74	8.21
HORVU1Hr1G070330.11	Barley	cytosol	30.26	5.75
HORVU5Hr1G020100.2	Barley	cytosol	1.75	1.7

Protein Annotations

EnsemblPlants:HORVU0Hr1G000510.2	EnsemblPlantsGene:HORVU0Hr1G000510	InterPro:RETICULATA-related	PANTHER:PTHR31620	PANTHER:PTHR31620:SF8	PFAM:PF11891
SEG:seg	UniParc:UPI000B460416	UniProt:A0A287DTS3	MapMan:35.1	:	:

Description

No Description!

Coordinates

chrchrUn:-:4052345..4055406

Molecular Weight (calculated)

24868.4 Da

IEP (calculated)

7.973

GRAVY (calculated)

0.355

Length

228 amino acids

Sequence
(BLAST)

001: MQGLENICSS PELRIEKLHA MQHSVLGCTA AEYERRRENF VKELDFVIAD VVMAIVADFM LVWLPAPTVS LQPALAVNAG AIAKFFHNCP DNAFQVALAG
101: SSYTFLQRFG AIMRNGAKLF AVGTSASLIG TGVTNAIIKA RKTVNKDEAG EVEDIPIVST SIAYGVYMAV SSNLRYQVLA GVIEQRMLEP LLHRHKLALS
201: ALCFAVRTGN TFLGSLLWVD YAKFIGIQ

Best Arabidopsis Sequence Match ( AT5G12470.1 )
(BLAST)

001: MAIASCFFCV PTPNTAISES NLTWPHIASF PRLSSSSSFN GVISAKSISF NRRVPITPVL SASSGNGGSD NNGGGLSGGG GGGDGGKNDG DGHGDEDRDR
101: NRNEAMLLLK ESGIELESLP KDLAAAIEAG RIPGSVITRF LELQKSAVMR WLMQFGGFRE RLLADDLFMA KLAMECGVGI FTKTAAEYER RRENFFNELE
201: VVFADVAMAI IADFMLVYLP APTVSLRPPL ALTAGGISKF FHNCPDNAFQ VALSGTSYTL LQRLGAITRN GAKLFAVGTT SSLVGTAITN AFIKARKAVD
301: QNSEGEVETV PIVSTSVAYG VYMAVSSNLR YQIVAGVIEQ RLLEPMLHQH KLALSALCFA VRTGNTFLGS LLWVDYARLI GIQKSH

Arabidopsis Description

RER4Protein RETICULATA-RELATED 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94CJ5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.