CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008880.1-P	Field mustard	cytosol	74.14	100.0
CDX97204	Canola	plastid	96.83	98.13
CDX78491	Canola	plastid	92.61	93.35
CDX70479	Canola	plastid	91.29	92.27
AT5G12470.1	Thale cress	plastid	85.75	84.2
GSMUA_Achr8P00440_001	Banana	cytosol, plasma membrane, plastid	43.27	76.64
HORVU0Hr1G000510.2	Barley	cytosol	42.74	71.05
KRH24069	Soybean	endoplasmic reticulum, mitochondrion	64.64	67.31
KRH29040	Soybean	endoplasmic reticulum	64.38	66.3
GSMUA_Achr8P08530_001	Banana	plastid	61.48	61.97
Os05t0388600-01	Rice	plasma membrane	61.48	61.64
TraesCS1B01G254100.1	Wheat	unclear	60.95	60.47
Zm00001d038085_P001	Maize	plastid	61.74	60.47
Os01t0957200-01	Rice	plastid	61.74	60.15
TraesCS1A01G242600.1	Wheat	plastid	60.69	59.9
PGSC0003DMT400082409	Potato	plastid	64.91	59.85
TraesCS1D01G242600.1	Wheat	golgi	60.42	59.64
Solyc11g065490.1.1	Tomato	plastid	64.38	59.08
HORVU3Hr1G109880.1	Barley	plastid	58.31	56.81
EES18163	Sorghum	plastid	61.48	56.42
Zm00001d042050_P001	Maize	plastid	57.26	52.29
KXG34151	Sorghum	plastid	54.09	49.04
CDY27990	Canola	plastid	24.01	28.35
CDY35990	Canola	plastid	24.01	28.26
CDY22156	Canola	plastid	23.22	25.81
CDY66586	Canola	plastid	22.96	25.44
CDY07766	Canola	plastid	26.65	24.4
CDX74930	Canola	plastid	26.65	23.88
CDX91387	Canola	plastid	26.39	23.58
CDY59488	Canola	plastid	25.59	23.15
CDX92336	Canola	plastid	25.33	22.7
CDY26956	Canola	plastid	25.07	22.57
CDX88782	Canola	plastid	23.48	15.4
CDX93185	Canola	plastid	29.82	15.35
CDY52926	Canola	plastid	29.55	15.07
CDX71014	Canola	plastid	23.48	15.06
CDY31998	Canola	plastid	29.29	14.94
CDX67635	Canola	plastid	29.29	14.94
CDX87117	Canola	plastid	20.58	14.83
CDX80466	Canola	plastid	20.32	14.61
CDX88129	Canola	cytosol	19.79	4.34
CDY67668	Canola	mitochondrion	1.06	2.37

Protein Annotations

EnsemblPlants:CDY53965	EnsemblPlantsGene:GSBRNA2T00011829001	InterPro:RETICULATA-related	PANTHER:PTHR31620	PANTHER:PTHR31620:SF11	PFAM:PF11891
ProteinID:CDY53965	ProteinID:CDY53965.1	SEG:seg	UniParc:UPI0001B63D47	UniProt:A0A078ISC0	MapMan:35.1

Description

BnaA10g29970DBnaA10g29970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ISC0]

Coordinates

chrLK033258:-:19535..22046

Molecular Weight (calculated)

40678.7 Da

IEP (calculated)

7.982

GRAVY (calculated)

0.097

Length

379 amino acids

Sequence
(BLAST)

001: MAITSSFFCV PTPNTSSISE SNLSRPSHLS FSPPRLSSSS SFTGVISSKS ISFHRRLTIS PVFSTGGSDN NNNNNGGSGG GGDGDGGGED RDRNRSEAMM
101: LLAESGTELE SLPKDLAAAI ESGRIPGSVI TRFLELQRSA VMRWLMQFAG FRERLLADDL FLAKLAMECG VGVFTKTAAE YERRRENFFN ELEVVFADVV
201: MAIIADFMLV YLPAPTVSLR PPLALSAGGL SKFFHNCPDN AFQIAISGTS YSLLQRFGAI ARNGAKLFAV GTTSSLVGTA VTNAFIKAKG AVDKTSEGEV
301: ETVPIVSTSV AYGVYMAVSS NLRYQVLAGV VEQRLLEPLL HQHKLALSAM CFAVRTGNTF LGSLLWVDYA RLIGIQKSH

Best Arabidopsis Sequence Match ( AT5G12470.1 )
(BLAST)

001: MAIASCFFCV PTPNTAISES NLTWPHIASF PRLSSSSSFN GVISAKSISF NRRVPITPVL SASSGNGGSD NNGGGLSGGG GGGDGGKNDG DGHGDEDRDR
101: NRNEAMLLLK ESGIELESLP KDLAAAIEAG RIPGSVITRF LELQKSAVMR WLMQFGGFRE RLLADDLFMA KLAMECGVGI FTKTAAEYER RRENFFNELE
201: VVFADVAMAI IADFMLVYLP APTVSLRPPL ALTAGGISKF FHNCPDNAFQ VALSGTSYTL LQRLGAITRN GAKLFAVGTT SSLVGTAITN AFIKARKAVD
301: QNSEGEVETV PIVSTSVAYG VYMAVSSNLR YQIVAGVIEQ RLLEPMLHQH KLALSALCFA VRTGNTFLGS LLWVDYARLI GIQKSH

Arabidopsis Description

RER4Protein RETICULATA-RELATED 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94CJ5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.