CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006636.1-P	Field mustard	plastid	98.27	96.76
CDX71014	Canola	plastid	93.94	91.88
CDY26956	Canola	plastid	58.13	79.81
CDX92336	Canola	plastid	57.44	78.49
AT5G22790.1	Thale cress	plastid	56.23	75.06
PGSC0003DMT400001155	Potato	plastid	41.0	61.88
Solyc11g066740.1.1	Tomato	plastid	40.83	61.62
KRH26562	Soybean	plastid	40.83	61.46
KRH22744	Soybean	plastid	39.1	58.55
VIT_06s0061g01160.t01	Wine grape	plastid	40.66	57.46
CDY07766	Canola	plastid	38.41	53.62
CDY59488	Canola	plastid	38.58	53.22
CDX91387	Canola	plastid	38.93	53.07
CDX74930	Canola	plastid	38.75	52.96
CDY22156	Canola	plastid	14.53	24.63
CDX97204	Canola	plastid	15.57	24.06
CDY27990	Canola	plastid	13.32	23.99
CDY66586	Canola	plastid	14.19	23.98
CDY35990	Canola	plastid	13.32	23.91
CDY53965	Canola	plastid	15.4	23.48
CDX70479	Canola	plastid	15.22	23.47
CDX78491	Canola	plastid	14.88	22.87
CDX80466	Canola	plastid	15.92	17.46
CDX87117	Canola	plastid	14.71	16.16
CDX93185	Canola	plastid	17.65	13.86
CDY52926	Canola	plastid	17.65	13.73
CDX67635	Canola	plastid	17.3	13.46
CDY31998	Canola	plastid	17.3	13.46
CDX88129	Canola	cytosol	15.22	5.09
CDY67668	Canola	mitochondrion	0.69	2.37

Protein Annotations

EnsemblPlants:CDX88782	EnsemblPlantsGene:GSBRNA2T00148841001	GO:A0A078DII9	InterPro:RETICULATA-related	PANTHER:PTHR31038	PANTHER:PTHR31038:SF9
PFAM:PF11891	ProteinID:CDX88782	ProteinID:CDX88782.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EF4D13
MapMan:35.1	:	:	:	:	:

Description

BnaA03g08670D

Coordinates

chrLK031856:+:903730..906276

Molecular Weight (calculated)

63432.4 Da

IEP (calculated)

5.329

GRAVY (calculated)

-0.208

Length

578 amino acids

Sequence
(BLAST)

001: MSLSLKISHL SNTLEPRDQC RAGRTFEFSS ICFRGGHWST EMFSPKLRTR CAGSDAGISG GRSVPEWTYT GSKDETFSDL EIDDDGNGDS GGNNGGGGDD
101: DGEEEEEEEK EFGPLVKLDE VMKETERRGI TLPEDMSEAA KSVGIRKLFL LRYLDLQGSV WPLGFLMRTC TMLRNRMLAD PSFLFKVGTE VAIDSCCATF
201: AEVQKRGEDF WSEFELYAAD LLVGLVVDVA LVGLLAPYAR IGKTSVVSST GLFKGLRRSC AALPSSVFEA ERPGCKFSVN QRIATFFYKG LLYGSVGFGC
301: GLIGQGIANM IMTAKRSIKK SEEDVPVPPL FESAALWGVF LGLSSNARYQ IINGLERVVE GSTAAKRIPV VAMAFTVGVR FANNVYGGYL PRAGSLSEPD
401: SSNRNTQNEP VQDFPILLVV YGFHHATMSR VSQLTLIFRD KLKTTNQSSN KKSDAVVKKQ PLAPSSSNDR ETRGAASWSS FQMPVHYPSF TKEEYEAMSE
501: EEVDRLLNLY GLQHTNLGDL SCKKQFAIGA FLWEKGIDSS PAEHELVNPS SSVDGFGESS LMGLMTALKY MVHCVFRV

Best Arabidopsis Sequence Match ( AT5G22790.1 )
(BLAST)

001: MSISLKISHI SSFSNDGFNS VKQCRVSQRF EIRSVCFRRS PGVESRRIHL NSDLSSRNLR NRCVGSDVVT GEISGRSIPD WAYSGVKDET LSDLEPELDD
101: GDGGDENGNN DGGGNGGNGD GGGGGGDGEG DDGEDEADKA EEKEFGPILK FEEVMKETER RGITLPEDML EAAKSVGIRK LFLLRYLDLQ GSVWPLGFLM
201: RSCAMLRNRM LADPSFLFKV GTEVAIDSCC ATFAEVQKRG EDFWSEFELY AADLLVGLVV DVALVGLLAP YARIGKPSVA STGLFKDLKR ACASLPSSVF
301: EAERPGCKFS VNQRIATFFY KGLLYGSVGF GCGLIGQGIA NLIMTAKRSV KKSEEDVPIP PLFESAALWG VFLGLSSNAR YQIINGLERV VEGSTAAKRI
401: PVVAMAFTVG VRFANNVYGG MQFVDWAKLS GVQ

Arabidopsis Description

RER1Protein RETICULATA-RELATED 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FGP9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.