Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY26956 | Canola | plastid | 83.83 | 86.22 |
| Bra002429.1-P | Field mustard | plastid | 83.14 | 85.71 |
| CDX92336 | Canola | plastid | 82.68 | 84.63 |
| KRH26562 | Soybean | plastid | 57.97 | 65.36 |
| PGSC0003DMT400001155 | Potato | plastid | 56.81 | 64.23 |
| Solyc11g066740.1.1 | Tomato | plastid | 56.58 | 63.97 |
| KRH22744 | Soybean | plastid | 56.35 | 63.21 |
| VIT_06s0061g01160.t01 | Wine grape | plastid | 57.74 | 61.12 |
| AT2G37860.4 | Thale cress | plastid | 57.51 | 57.64 |
| CDX88782 | Canola | plastid | 75.06 | 56.23 |
| Bra006636.1-P | Field mustard | plastid | 74.6 | 55.03 |
| CDX71014 | Canola | plastid | 75.06 | 54.99 |
| AT3G08640.1 | Thale cress | plastid | 21.48 | 27.6 |
| AT3G08630.1 | Thale cress | plastid | 20.09 | 25.66 |
| AT5G12470.1 | Thale cress | plastid | 22.17 | 24.87 |
| AT5G24690.1 | Thale cress | plastid | 19.4 | 16.12 |
| AT2G40400.1 | Thale cress | plastid | 21.94 | 12.93 |
| AT3G56140.1 | Thale cress | plastid | 22.17 | 12.89 |
Protein Annotations
| MapMan:35.1 | EntrezGene:832342 | UniProt:A0A178UC54 | ProteinID:AED93076.1 | EMBL:AF367348 | ArrayExpress:AT5G22790 |
| EnsemblPlantsGene:AT5G22790 | RefSeq:AT5G22790 | TAIR:AT5G22790 | RefSeq:AT5G22790-TAIR-G | EnsemblPlants:AT5G22790.1 | TAIR:AT5G22790.1 |
| EMBL:AY081723 | ProteinID:BAB09278.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005739 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009706 |
| GO:GO:0009941 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0031969 | RefSeq:NP_197671.1 | ProteinID:OAO91363.1 |
| PFAM:PF11891 | PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0003011 | PO:PO:0004507 | PO:PO:0005052 | PO:PO:0005660 | PO:PO:0006023 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PANTHER:PTHR31038 | PANTHER:PTHR31038:SF9 | UniProt:Q9FGP9 | Symbol:RER1 |
| InterPro:RETICULATA-related | TMHMM:TMhelix | UniParc:UPI00000A4877 | SEG:seg | : | : |
Description
RER1Protein RETICULATA-RELATED 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FGP9]
Coordinates
chr5:-:7599081..7602522
Molecular Weight (calculated)
46834.8 Da
IEP (calculated)
4.878
GRAVY (calculated)
-0.128
Length
433 amino acids
Sequence
(BLAST)
(BLAST)
001: MSISLKISHI SSFSNDGFNS VKQCRVSQRF EIRSVCFRRS PGVESRRIHL NSDLSSRNLR NRCVGSDVVT GEISGRSIPD WAYSGVKDET LSDLEPELDD
101: GDGGDENGNN DGGGNGGNGD GGGGGGDGEG DDGEDEADKA EEKEFGPILK FEEVMKETER RGITLPEDML EAAKSVGIRK LFLLRYLDLQ GSVWPLGFLM
201: RSCAMLRNRM LADPSFLFKV GTEVAIDSCC ATFAEVQKRG EDFWSEFELY AADLLVGLVV DVALVGLLAP YARIGKPSVA STGLFKDLKR ACASLPSSVF
301: EAERPGCKFS VNQRIATFFY KGLLYGSVGF GCGLIGQGIA NLIMTAKRSV KKSEEDVPIP PLFESAALWG VFLGLSSNAR YQIINGLERV VEGSTAAKRI
401: PVVAMAFTVG VRFANNVYGG MQFVDWAKLS GVQ
101: GDGGDENGNN DGGGNGGNGD GGGGGGDGEG DDGEDEADKA EEKEFGPILK FEEVMKETER RGITLPEDML EAAKSVGIRK LFLLRYLDLQ GSVWPLGFLM
201: RSCAMLRNRM LADPSFLFKV GTEVAIDSCC ATFAEVQKRG EDFWSEFELY AADLLVGLVV DVALVGLLAP YARIGKPSVA STGLFKDLKR ACASLPSSVF
301: EAERPGCKFS VNQRIATFFY KGLLYGSVGF GCGLIGQGIA NLIMTAKRSV KKSEEDVPIP PLFESAALWG VFLGLSSNAR YQIINGLERV VEGSTAAKRI
401: PVVAMAFTVG VRFANNVYGG MQFVDWAKLS GVQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.