CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002429.1-P	Field mustard	plastid	96.69	97.38
CDY26956	Canola	plastid	95.98	96.44
AT5G22790.1	Thale cress	plastid	84.63	82.68
PGSC0003DMT400001155	Potato	plastid	59.57	65.8
KRH26562	Soybean	plastid	59.1	65.1
Solyc11g066740.1.1	Tomato	plastid	58.63	64.75
KRH22744	Soybean	plastid	57.45	62.95
VIT_06s0061g01160.t01	Wine grape	plastid	59.81	61.86
CDX91387	Canola	plastid	58.63	58.49
CDY59488	Canola	plastid	57.45	58.0
CDY07766	Canola	plastid	56.5	57.73
CDX74930	Canola	plastid	57.68	57.68
CDX88782	Canola	plastid	78.49	57.44
CDX71014	Canola	plastid	78.01	55.84
CDY27990	Canola	plastid	20.09	26.48
CDY22156	Canola	plastid	21.28	26.39
CDY35990	Canola	plastid	19.86	26.09
CDY66586	Canola	plastid	20.8	25.73
CDX70479	Canola	plastid	22.7	25.6
CDY53965	Canola	plastid	22.7	25.33
CDX78491	Canola	plastid	22.46	25.27
CDX97204	Canola	plastid	22.22	25.13
CDX87117	Canola	plastid	20.33	16.35
CDX80466	Canola	plastid	20.09	16.13
CDX93185	Canola	plastid	22.93	13.18
CDY52926	Canola	plastid	22.7	12.92
CDX67635	Canola	plastid	22.46	12.79
CDY31998	Canola	plastid	22.46	12.79
CDX88129	Canola	cytosol	19.62	4.8
CDY67668	Canola	mitochondrion	0.95	2.37

Protein Annotations

EnsemblPlants:CDX92336	EnsemblPlantsGene:GSBRNA2T00154069001	GO:A0A078DST1	InterPro:RETICULATA-related	PANTHER:PTHR31038	PANTHER:PTHR31038:SF9
PFAM:PF11891	ProteinID:CDX92336	ProteinID:CDX92336.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EE1B3D
MapMan:35.1	:	:	:	:	:

Description

BnaA10g13750D

Coordinates

chrLK031872:+:28569..30706

Molecular Weight (calculated)

45077.9 Da

IEP (calculated)

5.212

GRAVY (calculated)

0.003

Length

423 amino acids

Sequence
(BLAST)

001: MSLTLKVSHI SNLSSDVFNT TVEPRIQCRA GQASVCFRRS AGFVSSRIHW SSELSSRSSR ARCVGSDVVT REISGRSKDE AFSELEPVLD GGDGGGGGDD
101: GGINGGSGGG GDGGGGGGEG GGDGEEDEAE EKEFGPILKF DEVMKETERR GIALPEDMLE AAKSVGIRKL FLLRYLDLQG SVWPLGFLMR TCTMLRNRML
201: ADPSFLFKVG TEVPIDSCCA TFAEVQKRGE DFWSEFELYA ADLLVGLVVD VALVGLLAPY ARIGKTSLPS STGLFSGLKR SCAALPSSVF EAERPGCKFS
301: VNQRVATFFY KGVLYGSVGF GCGLIGQGIA NLIMTAKRSI KKSEEDVPVP PLFESAALWG VFLGLSSNAR YQIINGLERV VEGSTAAKRI PVVAMAFTVG
401: VRFANNVYGG MQFVDWAKLS GVQ

Best Arabidopsis Sequence Match ( AT5G22790.1 )
(BLAST)

001: MSISLKISHI SSFSNDGFNS VKQCRVSQRF EIRSVCFRRS PGVESRRIHL NSDLSSRNLR NRCVGSDVVT GEISGRSIPD WAYSGVKDET LSDLEPELDD
101: GDGGDENGNN DGGGNGGNGD GGGGGGDGEG DDGEDEADKA EEKEFGPILK FEEVMKETER RGITLPEDML EAAKSVGIRK LFLLRYLDLQ GSVWPLGFLM
201: RSCAMLRNRM LADPSFLFKV GTEVAIDSCC ATFAEVQKRG EDFWSEFELY AADLLVGLVV DVALVGLLAP YARIGKPSVA STGLFKDLKR ACASLPSSVF
301: EAERPGCKFS VNQRIATFFY KGLLYGSVGF GCGLIGQGIA NLIMTAKRSV KKSEEDVPIP PLFESAALWG VFLGLSSNAR YQIINGLERV VEGSTAAKRI
401: PVVAMAFTVG VRFANNVYGG MQFVDWAKLS GVQ

Arabidopsis Description

RER1Protein RETICULATA-RELATED 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FGP9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.