CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35990	Canola	plastid	95.95	95.65
AT3G08630.1	Thale cress	plastid	78.19	74.04
CDY66586	Canola	plastid	77.88	73.1
CDY22156	Canola	plastid	77.57	73.02
EES13002	Sorghum	mitochondrion, plastid	44.55	57.89
KRH09563	Soybean	plastid	56.07	56.25
VIT_08s0056g00560.t01	Wine grape	plastid	60.44	55.27
PGSC0003DMT400016786	Potato	plastid	59.5	53.8
Os01t0812900-01	Rice	plastid	57.94	53.45
Solyc09g031940.1.1	Tomato	plastid	59.19	53.22
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	47.98	53.1
PGSC0003DMT400071250	Potato	plastid	59.5	52.47
Solyc10g074880.1.1	Tomato	plastid	58.26	52.09
KXG33587	Sorghum	plastid	55.14	51.6
TraesCS3B01G368200.1	Wheat	golgi, plastid, unclear	56.07	51.58
TraesCS3A01G337100.1	Wheat	golgi, plastid, unclear	56.39	51.27
TraesCS3D01G330200.1	Wheat	plastid	56.7	51.27
Zm00001d043119_P001	Maize	plastid	54.52	51.17
Zm00001d012539_P001	Maize	extracellular, mitochondrion, plastid	53.27	49.85
GSMUA_Achr8P01660_001	Banana	plastid	52.96	48.02
GSMUA_Achr11P...	Banana	plastid	54.83	47.83
HORVU3Hr1G079620.1	Barley	mitochondrion, plastid	54.52	42.17
CDX97204	Canola	plastid	28.35	24.33
CDY53965	Canola	plastid	28.35	24.01
CDX70479	Canola	plastid	28.04	24.0
CDX78491	Canola	plastid	28.04	23.94
CDY26956	Canola	plastid	27.1	20.67
CDX92336	Canola	plastid	26.48	20.09
CDX74930	Canola	plastid	26.17	19.86
CDX91387	Canola	plastid	26.17	19.81
CDY59488	Canola	plastid	24.92	19.09
CDY07766	Canola	plastid	24.61	19.08
CDX87117	Canola	plastid	22.43	13.69
CDX71014	Canola	plastid	24.61	13.37
CDX88782	Canola	plastid	23.99	13.32
CDX80466	Canola	plastid	21.18	12.9
CDX67635	Canola	plastid	25.23	10.9
CDX93185	Canola	plastid	24.92	10.87
CDY31998	Canola	plastid	24.92	10.77
CDY52926	Canola	plastid	24.61	10.63
CDX88129	Canola	cytosol	20.87	3.87
CDY67668	Canola	mitochondrion	1.56	2.96

Protein Annotations

EnsemblPlants:CDY27990	EnsemblPlantsGene:GSBRNA2T00038914001	GO:A0A078GN52	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:RETICULATA-related	PANTHER:PTHR31620	PANTHER:PTHR31620:SF5	PFAM:PF11891	ProteinID:CDY27990	ProteinID:CDY27990.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EE9EF1	UniProt:A0A078GN52	MapMan:35.1	:

Description

BnaC05g43920DBnaC05g43920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GN52]

Coordinates

chrLK032213:-:109465..110430

Molecular Weight (calculated)

33498.6 Da

IEP (calculated)

9.830

GRAVY (calculated)

0.160

Length

321 amino acids

Sequence
(BLAST)

001: MAAIARLHLS AKPNQTGPRA INLTRDPRLV VSFPRNASVC SSLRTSPNLP AASSAGGGGS GGNFVGGGGG GDNGDSGGKQ EPSPWGPIGM FIQGWRSRVA
101: ADPQFPFKVL MEELVGVTAN VLGDMASRPN FGLNELDFVF STLVVGSILN FTLMYLLAPS AASAGASNLL PGIFKACPAS HMFEQGSFTV VNRFGTLVYK
201: GMVFATVGLA AGLVGTAISN GLIMLRKKMD PGFEPPNKAP PTVLNSLTWA AHMGVSANVR YQTLNGVEFL MERGLPPLVF KTGVVALRVV NNLLGGMSFV
301: VLARLTGSQS VGEEKAEEKD D

Best Arabidopsis Sequence Match ( AT3G08630.1 )
(BLAST)

001: MAAMAAKLHI STKSDQSNVR LPRLINLSRD PTARVLFPRN GSVSSLHTNF SSPNIMVPCA GGGGGGSIGN HGGGSGSGGG GGGYGGSEEE ESSPWGPLGL
101: FIQGWRSRVA ADSQFPFKVL MEMLVGVSAN VLGDMASRPN FGLNELDFVF STLVVGSILN FTLMYLLAPS AISHGSSNLL PGIFRSCPSS HMFEQGNFTL
201: MNRFGTLVYK GMVFATVGLA AGLVGTAISN GLIMLRKKID PSFETPNKPP PTLLNSLTWA THMGVSANVR YQTLNGAEFL LEKSLPPLVF KTSVIALRVV
301: NNVLGGMSFV TLARMTGSQS VEEEKKIEMS EISEKEKED

Arabidopsis Description

RER2Protein RETICULATA-RELATED 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C9Z3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.