CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
mitochondrion 4
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra040052.1-P	Field mustard	golgi, plasma membrane, plastid	50.62	65.85
CDY35990	Canola	plastid	57.5	57.14
Bra029704.1-P	Field mustard	plastid	57.19	57.01
KRH00511	Soybean	endoplasmic reticulum	61.56	56.77
KRH40643	Soybean	mitochondrion	61.88	56.73
EES13002	Sorghum	mitochondrion, plastid	43.44	56.28
CDY27990	Canola	plastid	56.25	56.07
AT3G08640.1	Thale cress	plastid	57.81	54.9
AT3G08630.1	Thale cress	plastid	57.5	54.28
CDY22156	Canola	plastid	57.5	53.96
CDY66586	Canola	plastid	57.19	53.51
VIT_08s0056g00560.t01	Wine grape	plastid	58.12	52.99
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	45.62	50.34
Os01t0812900-01	Rice	plastid	54.06	49.71
Zm00001d043119_P001	Maize	plastid	52.19	48.83
TraesCS3B01G368200.1	Wheat	golgi, plastid, unclear	53.12	48.71
KXG33587	Sorghum	plastid	51.56	48.1
TraesCS3A01G337100.1	Wheat	golgi, plastid, unclear	52.81	47.88
TraesCS3D01G330200.1	Wheat	plastid	52.81	47.61
Zm00001d012539_P001	Maize	extracellular, mitochondrion, plastid	50.94	47.52
GSMUA_Achr11P...	Banana	plastid	53.12	46.2
GSMUA_Achr8P01660_001	Banana	plastid	50.62	45.76
HORVU3Hr1G079620.1	Barley	mitochondrion, plastid	53.12	40.96
KRH24069	Soybean	endoplasmic reticulum, mitochondrion	26.25	23.08
KRH29040	Soybean	endoplasmic reticulum	25.94	22.55
KRH39906	Soybean	mitochondrion, plastid	25.94	22.07
KRH23903	Soybean	nucleus, plastid	25.62	22.04
KRH22744	Soybean	plastid	26.56	22.02
KRH26562	Soybean	plastid	25.94	21.61
KRH49190	Soybean	endoplasmic reticulum	29.06	20.99
KRH00055	Soybean	plastid	28.75	20.67
KRG88973	Soybean	plastid	24.69	20.1
KRH33749	Soybean	plastid	15.31	17.19
KRH44019	Soybean	mitochondrion, nucleus, plastid	20.0	12.33
KRH10440	Soybean	endoplasmic reticulum, nucleus, plastid	19.38	11.85
KRG97671	Soybean	plastid	25.0	10.71
KRH31203	Soybean	plastid	24.69	10.56

Protein Annotations

EMBL:ACUP02010282	EnsemblPlants:KRH09563	EnsemblPlantsGene:GLYMA_16G221100	EntrezGene:100792419	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:RETICULATA-related	PANTHER:PTHR31620	PANTHER:PTHR31620:SF5	PFAM:PF11891	ProteinID:KRH09563
ProteinID:KRH09563.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0001BA8A82	UniProt:I1MQQ0	MapMan:35.1

Description

hypothetical protein

Coordinates

chr16:-:37794742..37796395

Molecular Weight (calculated)

34037.2 Da

IEP (calculated)

10.196

GRAVY (calculated)

0.121

Length

320 amino acids

Sequence
(BLAST)

001: MAMAAQAMAQ FRFSPLSSHY RYHYQYNYHS TPSFPSPRRH PRNQRLHLSF SGGDRGGSGG GGGGGDSDGG GGDNEKNVGL GVVGMVLNGW RSRVAADPQF
101: PFKVLMEELV GVSAAVAGDM ATRPKFGLNE LDLVFSTLVV GSILNFILMY LLAPTSCSSS SSTLPWIFAR CPSSHMFEAG PYGSVERLGT LLYKGGVFAL
201: VGLGAGLVGT AISNGLIATR KKVDPTFQSP NKSPPMVLNA FTWAAHMGVS SNVRYQTLNG VEFLLDKWLP PLLFKFSVLA LRFINNVAGG MTFVMLARFT
301: GSQAAAAAAV PVPVPVPKHS

Best Arabidopsis Sequence Match ( AT3G08640.1 )
(BLAST)

001: MAAMAAKLQL SAKSDQSSVR LPRVINLSRD PTTRVSFPRN GSVCSLHTNF SSPHLAKPCA GGGGGGSTGN NGGGSGSGGG GGGFGGSGGE ASEESSPWGP
101: IGLFIQGWRS RVAADPQFPF KVLMEEIVGL SACVLGDMAS RPNFGLNELD FVFSTLVVGS ILNFVLMYML APTAATLGSS QTLPGIFRNC PSSHMFEQGS
201: FTVMNRFGTL VYKGMVFASV GLAAGLVGTA ISNGLIMLRK KMDPSFETPN KPPPTVLNSL TWATHMGVSA NARYQTLNGI EFLLAKVLPP LVFKTSVIVL
301: RCANNVAGGM SFVLLARMTG SQSVEEKTEI SEKEKDD

Arabidopsis Description

RER3Protein RETICULATA-RELATED 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C9Z2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.