CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 8
mitochondrion 2

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 23041469
extracellular: 25724908
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 25724908 doi

VC Clarke, PC Loughlin, A Gavrin, C Chen, EM Brear, DA Day, PM Smith

From the ‡University of Sydney, School of Biological Sciences, Sydney Australia;, From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; penny.smith@sydney.edu.au., From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; §Flinders University, School of Biological Sciences, Adelaide Australia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH40643	Soybean	mitochondrion	95.68	95.13
KRH09563	Soybean	plastid	56.77	61.56
EES13002	Sorghum	mitochondrion, plastid	43.8	61.54
VIT_08s0056g00560.t01	Wine grape	plastid	60.81	60.11
PGSC0003DMT400016786	Potato	plastid	59.08	57.75
Solyc09g031940.1.1	Tomato	plastid	58.79	57.14
PGSC0003DMT400071250	Potato	plastid	59.65	56.87
Solyc10g074880.1.1	Tomato	plastid	58.21	56.27
Zm00001d012539_P001	Maize	extracellular, mitochondrion, plastid	55.33	55.98
Os01t0812900-01	Rice	plastid	55.04	54.89
Zm00001d043119_P001	Maize	plastid	53.6	54.39
KXG33587	Sorghum	plastid	53.03	53.64
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	44.67	53.45
TraesCS3B01G368200.1	Wheat	golgi, plastid, unclear	53.6	53.3
TraesCS3A01G337100.1	Wheat	golgi, plastid, unclear	53.6	52.69
TraesCS3D01G330200.1	Wheat	plastid	53.6	52.39
GSMUA_Achr11P...	Banana	plastid	54.76	51.63
GSMUA_Achr8P01660_001	Banana	plastid	50.14	49.15
HORVU3Hr1G079620.1	Barley	mitochondrion, plastid	53.6	44.82
KRH39906	Soybean	mitochondrion, plastid	25.65	23.67
KRH24069	Soybean	endoplasmic reticulum, mitochondrion	24.78	23.63
KRH23903	Soybean	nucleus, plastid	25.07	23.39
KRH29040	Soybean	endoplasmic reticulum	23.92	22.55
KRH22744	Soybean	plastid	24.21	21.76
KRH26562	Soybean	plastid	23.63	21.35
KRG88973	Soybean	plastid	23.92	21.12
KRH49190	Soybean	endoplasmic reticulum	25.94	20.32
KRH00055	Soybean	plastid	25.36	19.78
KRH33749	Soybean	plastid	14.99	18.25
KRH44019	Soybean	mitochondrion, nucleus, plastid	19.6	13.1
KRH10440	Soybean	endoplasmic reticulum, nucleus, plastid	19.31	12.81
KRH31203	Soybean	plastid	25.07	11.63
KRG97671	Soybean	plastid	24.78	11.51

Protein Annotations

EMBL:ACUP02011451	EnsemblPlants:KRH00511	EnsemblPlantsGene:GLYMA_18G217200	EntrezGene:100815884	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:RETICULATA-related	PANTHER:PTHR31620	PANTHER:PTHR31620:SF5	PFAM:PF11891	ProteinID:KRH00511
ProteinID:KRH00511.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0000E648C8	UniProt:I1N3B9	MapMan:35.1

Description

hypothetical protein

Coordinates

chr18:-:50451061..50454354

Molecular Weight (calculated)

36925.8 Da

IEP (calculated)

9.149

GRAVY (calculated)

0.018

Length

347 amino acids

Sequence
(BLAST)

001: MAAMAMLRLS PLSGQNHALS FPSSPSPPPK LQNRPLYLTN LPHLPQRLKL SFAGGDGGDG VGRGGGGGGG GESWGDEGKP KDSSFGILGL FLNGWRSRVA
101: ADPQFPFKVL MEELVGVSAC VLGDMASRPN FGLNELDFVF STLVVGAILN FTLMYLLAPT MTSSAASNLP ALFASCPKSH MFEPGAFSLL DRLGTLVYKG
201: TIFSVVGFGA GLVGTTLSNG LIKMRKKMDP TFETPNKPPP TFLNALTWAG HMGVSSNLRY QTLNGVEFML ERVLNPLAFK SSVLVLRCVN NVIGGMSFVV
301: LARLTGAQSV GGEQKKENEV ALIAEKEKLE SEREEGLQNN QSTAPSK

Best Arabidopsis Sequence Match ( AT3G08640.1 )
(BLAST)

001: MAAMAAKLQL SAKSDQSSVR LPRVINLSRD PTTRVSFPRN GSVCSLHTNF SSPHLAKPCA GGGGGGSTGN NGGGSGSGGG GGGFGGSGGE ASEESSPWGP
101: IGLFIQGWRS RVAADPQFPF KVLMEEIVGL SACVLGDMAS RPNFGLNELD FVFSTLVVGS ILNFVLMYML APTAATLGSS QTLPGIFRNC PSSHMFEQGS
201: FTVMNRFGTL VYKGMVFASV GLAAGLVGTA ISNGLIMLRK KMDPSFETPN KPPPTVLNSL TWATHMGVSA NARYQTLNGI EFLLAKVLPP LVFKTSVIVL
301: RCANNVAGGM SFVLLARMTG SQSVEEKTEI SEKEKDD

Arabidopsis Description

RER3Protein RETICULATA-RELATED 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C9Z2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.