Factsheet for PGSC0003DMT400016786

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 3
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g031940.1.1	Tomato	plastid	93.24	92.72
PGSC0003DMT400071250	Potato	plastid	71.55	69.78
Bra040052.1-P	Field mustard	golgi, plasma membrane, plastid	48.17	69.51
EES13002	Sorghum	mitochondrion, plastid	45.63	65.59
VIT_08s0056g00560.t01	Wine grape	plastid	62.54	63.25
Bra029704.1-P	Field mustard	plastid	54.65	60.44
CDY35990	Canola	plastid	54.65	60.25
AT3G08640.1	Thale cress	plastid	56.62	59.64
CDY27990	Canola	plastid	53.8	59.5
KRH00511	Soybean	endoplasmic reticulum	57.75	59.08
AT3G08630.1	Thale cress	plastid	56.06	58.7
Zm00001d043119_P001	Maize	plastid	56.34	58.48
KRH40643	Soybean	mitochondrion	57.46	58.45
Os01t0812900-01	Rice	plastid	56.9	58.05
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	47.04	57.59
CDY22156	Canola	plastid	55.21	57.48
CDY66586	Canola	plastid	54.65	56.73
KXG33587	Sorghum	plastid	54.65	56.56
Zm00001d012539_P001	Maize	extracellular, mitochondrion, plastid	54.37	56.27
TraesCS3D01G330200.1	Wheat	plastid	55.49	55.49
TraesCS3A01G337100.1	Wheat	golgi, plastid, unclear	54.93	55.24
TraesCS3B01G368200.1	Wheat	golgi, plastid, unclear	54.08	55.01
GSMUA_Achr8P01660_001	Banana	plastid	51.83	51.98
GSMUA_Achr11P...	Banana	plastid	52.39	50.54
HORVU3Hr1G079620.1	Barley	mitochondrion, plastid	55.21	47.23
PGSC0003DMT400017452	Potato	plastid	25.35	23.68
PGSC0003DMT400001155	Potato	plastid	24.23	22.45
PGSC0003DMT400082409	Potato	plastid	24.23	20.92
PGSC0003DMT400062339	Potato	mitochondrion	24.51	20.23
PGSC0003DMT400061143	Potato	plastid	18.87	12.79
PGSC0003DMT400061517	Potato	mitochondrion	25.07	11.91

Protein Annotations

EnsemblPlants:PGSC0003DMT400016786	EnsemblPlantsGene:PGSC0003DMG400006564	EntrezGene:102590049	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:RETICULATA-related	PANTHER:PTHR31620	PANTHER:PTHR31620:SF5	PFAM:PF11891	PGSC:PGSC0003DMG400006564	RefSeq:XP_006359982.1
RefSeq:XP_006359983.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI000296B4BD	UniProt:M1A854	MapMan:35.1

Description

Alphavirus core protein family [Source:PGSC_GENE;Acc:PGSC0003DMG400006564]

Coordinates

chr00:+:9526154..9529061

Molecular Weight (calculated)

37843.4 Da

IEP (calculated)

8.463

GRAVY (calculated)

0.085

Length

355 amino acids

Sequence
(BLAST)

001: MSAVVQLRCS SLPAHYHYQS RYFSAVKPTF SDNSCVKNLN FNPLRTSHVG SKKLLIKYQV PCAGGGGDDG GSIGIGGGGD GDSSDGGHSD DSWDSFGPIG
101: AFLNGWRSRV AADPQFPFKV LMEELVGVTS AVIGDMASRP NFGLNELDFV FSTLVVGSIL NFVLMYILAP TASVSSRTLP SIFASCPPSH MFEPGAYSLF
201: SRVGTLVYKG TLFAAVGFAA GLVGTAISNG LIKIRKKMDP NFETPNKPPP TLLNAATWAT HMGVSSNLRY QTLNGIEFLL DKALPPVVFK TFVVVLRCLN
301: NVLGGMSFVM LARLTGSQSV DKGEVVTAKD DGVNVEKERL LNQSDSIQTG HSVSK

Best Arabidopsis Sequence Match ( AT3G08640.1 )
(BLAST)

001: MAAMAAKLQL SAKSDQSSVR LPRVINLSRD PTTRVSFPRN GSVCSLHTNF SSPHLAKPCA GGGGGGSTGN NGGGSGSGGG GGGFGGSGGE ASEESSPWGP
101: IGLFIQGWRS RVAADPQFPF KVLMEEIVGL SACVLGDMAS RPNFGLNELD FVFSTLVVGS ILNFVLMYML APTAATLGSS QTLPGIFRNC PSSHMFEQGS
201: FTVMNRFGTL VYKGMVFASV GLAAGLVGTA ISNGLIMLRK KMDPSFETPN KPPPTVLNSL TWATHMGVSA NARYQTLNGI EFLLAKVLPP LVFKTSVIVL
301: RCANNVAGGM SFVLLARMTG SQSVEEKTEI SEKEKDD

Arabidopsis Description

RER3Protein RETICULATA-RELATED 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C9Z2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.