Factsheet for GSMUA_Achr8P01660_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
peroxisome 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	62.99	76.9
Bra040052.1-P	Field mustard	golgi, plasma membrane, plastid	42.37	60.98
EES13002	Sorghum	mitochondrion, plastid	42.09	60.32
VIT_08s0056g00560.t01	Wine grape	plastid	53.95	54.42
Bra029704.1-P	Field mustard	plastid	48.02	52.96
CDY27990	Canola	plastid	48.02	52.96
CDY35990	Canola	plastid	48.02	52.8
AT3G08640.1	Thale cress	plastid	50.0	52.52
PGSC0003DMT400016786	Potato	plastid	51.98	51.83
Solyc10g074880.1.1	Tomato	plastid	52.54	51.81
PGSC0003DMT400071250	Potato	plastid	53.11	51.65
KRH40643	Soybean	mitochondrion	50.56	51.29
Os01t0812900-01	Rice	plastid	50.28	51.15
CDY22156	Canola	plastid	49.15	51.03
Solyc09g031940.1.1	Tomato	plastid	51.13	50.7
KRH09563	Soybean	plastid	45.76	50.62
CDY66586	Canola	plastid	48.87	50.58
AT3G08630.1	Thale cress	plastid	48.31	50.44
KRH00511	Soybean	endoplasmic reticulum	49.15	50.14
GSMUA_Achr11P...	Banana	plastid	51.41	49.46
Zm00001d012539_P001	Maize	extracellular, mitochondrion, plastid	47.74	49.27
KXG33587	Sorghum	plastid	47.18	48.69
Zm00001d043119_P001	Maize	plastid	46.89	48.54
TraesCS3A01G337100.1	Wheat	golgi, plastid, unclear	47.46	47.59
TraesCS3D01G330200.1	Wheat	plastid	47.46	47.32
TraesCS3B01G368200.1	Wheat	golgi, plastid, unclear	46.61	47.28
HORVU3Hr1G079620.1	Barley	mitochondrion, plastid	46.61	39.76
GSMUA_Achr8P00440_001	Banana	cytosol, plasma membrane, plastid	17.51	28.97
GSMUA_Achr8P08530_001	Banana	plastid	22.6	21.28
GSMUA_Achr7P14970_001	Banana	plastid	21.19	16.97
GSMUA_Achr2P05940_001	Banana	cytosol, extracellular, plasma membrane	18.08	14.61
GSMUA_Achr8P13730_001	Banana	extracellular, plasma membrane	20.34	10.88
GSMUA_Achr6P35670_001	Banana	plastid	21.47	10.72
GSMUA_AchrUn_...	Banana	plastid	21.19	10.0

Protein Annotations

EnsemblPlants:GSMUA_Achr8P01660_001	EnsemblPlants:GSMUA_Achr8T01660_001	EnsemblPlantsGene:GSMUA_Achr8G01660_001	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:RETICULATA-related	PANTHER:PTHR31620	PANTHER:PTHR31620:SF5	PFAM:PF11891	SEG:seg	TMHMM:TMhelix
UniParc:UPI00029529AC	UniProt:M0TLR8	MapMan:35.1	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr8G01660_001]

Coordinates

chr8:-:1297141..1299197

Molecular Weight (calculated)

37385.8 Da

IEP (calculated)

8.238

GRAVY (calculated)

-0.051

Length

354 amino acids

Sequence
(BLAST)

001: MVTATAAPQF RLSSLPNRAG ICRFPGGTHH DHLPSFSPPS SSRPFPSLSL RLLLPRSANP SLSQSLTSPD SAVLSGGGSS IPPNGPGDNG RGGSGGDGTP
101: DDDRHRGEPA SSDPSGPLGL FLQGWRSRVS ADPQFPFKVL MEELVGVTSC VLGDMASRPN FGLNELDLVF CTLVVGSIVN FVLIHMFQPG HYSLLSRLGT
201: FVYKGATFAA VGFAAGLAGT AISNGLIALR KKMDPEFETP NKPPPTVLNA LTWAIHMGLS SNFRYQTLNG VEFVMEKALP SAGFKASVVV LRCLNNVLGG
301: MSFVMLARLT GSQKAAGSVD QKEEIKEKLA SHSATPFAED GDGELRKSDA LCRF

Best Arabidopsis Sequence Match ( AT3G08640.1 )
(BLAST)

001: MAAMAAKLQL SAKSDQSSVR LPRVINLSRD PTTRVSFPRN GSVCSLHTNF SSPHLAKPCA GGGGGGSTGN NGGGSGSGGG GGGFGGSGGE ASEESSPWGP
101: IGLFIQGWRS RVAADPQFPF KVLMEEIVGL SACVLGDMAS RPNFGLNELD FVFSTLVVGS ILNFVLMYML APTAATLGSS QTLPGIFRNC PSSHMFEQGS
201: FTVMNRFGTL VYKGMVFASV GLAAGLVGTA ISNGLIMLRK KMDPSFETPN KPPPTVLNSL TWATHMGVSA NARYQTLNGI EFLLAKVLPP LVFKTSVIVL
301: RCANNVAGGM SFVLLARMTG SQSVEEKTEI SEKEKDD

Arabidopsis Description

RER3Protein RETICULATA-RELATED 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C9Z2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.