Factsheet for GSMUA_Achr11P10440_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 5
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra040052.1-P	Field mustard	golgi, plasma membrane, plastid	42.93	64.23
EES13002	Sorghum	mitochondrion, plastid	40.22	59.92
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	45.38	57.59
KRH40643	Soybean	mitochondrion	52.45	55.3
Bra029704.1-P	Field mustard	plastid	48.1	55.14
CDY35990	Canola	plastid	48.1	54.97
CDY27990	Canola	plastid	47.83	54.83
KRH00511	Soybean	endoplasmic reticulum	51.63	54.76
VIT_08s0056g00560.t01	Wine grape	plastid	51.63	54.13
AT3G08640.1	Thale cress	plastid	49.46	54.01
AT3G08630.1	Thale cress	plastid	49.73	53.98
Zm00001d012539_P001	Maize	extracellular, mitochondrion, plastid	50.27	53.94
Zm00001d043119_P001	Maize	plastid	50.0	53.8
KXG33587	Sorghum	plastid	49.73	53.35
CDY66586	Canola	plastid	49.46	53.22
Os01t0812900-01	Rice	plastid	50.27	53.16
KRH09563	Soybean	plastid	46.2	53.12
CDY22156	Canola	plastid	49.18	53.08
PGSC0003DMT400016786	Potato	plastid	50.54	52.39
TraesCS3D01G330200.1	Wheat	plastid	50.54	52.39
TraesCS3B01G368200.1	Wheat	golgi, plastid, unclear	49.46	52.15
TraesCS3A01G337100.1	Wheat	golgi, plastid, unclear	50.0	52.12
GSMUA_Achr8P01660_001	Banana	plastid	49.46	51.41
PGSC0003DMT400071250	Potato	plastid	50.82	51.37
Solyc09g031940.1.1	Tomato	plastid	49.73	51.26
Solyc10g074880.1.1	Tomato	plastid	50.0	51.25
HORVU3Hr1G079620.1	Barley	mitochondrion, plastid	49.18	43.61
GSMUA_Achr8P00440_001	Banana	cytosol, plasma membrane, plastid	16.03	27.57
GSMUA_Achr8P08530_001	Banana	plastid	23.1	22.61
GSMUA_Achr7P14970_001	Banana	plastid	20.11	16.74
GSMUA_Achr2P05940_001	Banana	cytosol, extracellular, plasma membrane	17.93	15.07
GSMUA_Achr6P35670_001	Banana	plastid	24.46	12.69
GSMUA_AchrUn_...	Banana	plastid	23.1	11.33
GSMUA_Achr8P13730_001	Banana	extracellular, plasma membrane	18.75	10.42

Protein Annotations

EnsemblPlants:GSMUA_Achr11P10440_001	EnsemblPlants:GSMUA_Achr11T10440_001	EnsemblPlantsGene:GSMUA_Achr11G10440_001	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:RETICULATA-related	PANTHER:PTHR31620	PANTHER:PTHR31620:SF5	PFAM:PF11891	SEG:seg	TMHMM:TMhelix
UniParc:UPI000295C97F	UniProt:M0RR24	MapMan:35.1	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr11G10440_001]

Coordinates

chr11:+:8260352..8261744

Molecular Weight (calculated)

38636.8 Da

IEP (calculated)

8.597

GRAVY (calculated)

0.110

Length

368 amino acids

Sequence
(BLAST)

001: MAAPLRYALL HNPATDLSGK HHGYILRVIP SSYRATAAAK STTLCSLLRL KRTNPNLPRS LSSSDLPSPG GGAGDGIHFS GGGGGGGGGW GSDGTPGDHH
101: HGEEPSGGSG PLGVFLEGWR ARVSADPQFP FKVLMEELVG VSACVLGDMA SRPNFGLNEL DFVFSTLVVG SILNFVLMYL LAPTSASASA SSALPGIFAS
201: CVTFATVGFA AGLVGTAISN GLIALRKRMD PEFEVPNKPP PTMLNACTWA LHMGLSSNLR YQTLNGMEFV MENVLPPAGF KSSVLVLRCL NNVLGGMSFV
301: MLARLTGAQK VEADKGEEKK RSIDSGVLAV AEVGSTNSQS ASKQKHLMML SIMCKWFNNV KGFAELLH

Best Arabidopsis Sequence Match ( AT3G08640.1 )
(BLAST)

001: MAAMAAKLQL SAKSDQSSVR LPRVINLSRD PTTRVSFPRN GSVCSLHTNF SSPHLAKPCA GGGGGGSTGN NGGGSGSGGG GGGFGGSGGE ASEESSPWGP
101: IGLFIQGWRS RVAADPQFPF KVLMEEIVGL SACVLGDMAS RPNFGLNELD FVFSTLVVGS ILNFVLMYML APTAATLGSS QTLPGIFRNC PSSHMFEQGS
201: FTVMNRFGTL VYKGMVFASV GLAAGLVGTA ISNGLIMLRK KMDPSFETPN KPPPTVLNSL TWATHMGVSA NARYQTLNGI EFLLAKVLPP LVFKTSVIVL
301: RCANNVAGGM SFVLLARMTG SQSVEEKTEI SEKEKDD

Arabidopsis Description

RER3Protein RETICULATA-RELATED 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C9Z2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.