Factsheet for GSMUA_Achr8P13730_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU75601	Sorghum	cytosol, mitochondrion, plasma membrane	9.82	87.84
EES11134	Sorghum	plastid	39.73	66.25
Os04t0524400-01	Rice	plastid	39.58	65.66
TraesCS2B01G394800.1	Wheat	golgi, plastid	38.52	64.89
TraesCS2D01G374200.1	Wheat	plastid	38.37	64.63
TraesCS2A01G377800.1	Wheat	plastid	37.76	63.78
Zm00001d002980_P001	Maize	plastid	38.22	63.25
HORVU2Hr1G090260.1	Barley	plastid	37.61	61.03
GSMUA_Achr7P14970_001	Banana	plastid	36.56	54.75
Solyc09g011340.2.1	Tomato	plastid	35.35	54.67
PGSC0003DMT400062339	Potato	mitochondrion	35.35	54.42
Os03t0390900-01	Rice	plastid	12.84	40.87
GSMUA_Achr8P00440_001	Banana	cytosol, plasma membrane, plastid	9.82	30.37
GSMUA_Achr8P08530_001	Banana	plastid	15.11	26.6
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	9.82	22.41
GSMUA_Achr8P01660_001	Banana	plastid	10.88	20.34
GSMUA_Achr11P...	Banana	plastid	10.42	18.75
GSMUA_Achr2P05940_001	Banana	cytosol, extracellular, plasma membrane	10.88	16.44
GSMUA_Achr6P35670_001	Banana	plastid	14.2	13.26
GSMUA_AchrUn_...	Banana	plastid	14.05	12.4

Protein Annotations

MapMan:11.4.2.5	Gene3D:3.40.50.2300	InterPro:CheY-like_superfamily	GO:GO:0000160	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	EnsemblPlantsGene:GSMUA_Achr8G13730_001	EnsemblPlants:GSMUA_Achr8P13730_001	EnsemblPlants:GSMUA_Achr8T13730_001	InterPro:IPR001789	UniProt:M0TQ76
PFAM:PF00072	PFAM:PF11891	PFscan:PS50110	PANTHER:PTHR31038	PANTHER:PTHR31038:SF9	InterPro:RETICULATA-related
SMART:SM00448	SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0002952618
SEG:seg	:	:	:	:	:

Description

Putative uncharacterized protein [Source:GMGC_GENE;Acc:GSMUA_Achr8G13730_001]

Coordinates

chr8:-:10491431..10506285

Molecular Weight (calculated)

72020.8 Da

IEP (calculated)

7.286

GRAVY (calculated)

0.064

Length

662 amino acids

Sequence
(BLAST)

001: MASSAPATVV LFLAVLSLLS AYASARPGIP FNTVFVSYTI TTTASSDDAL PGLHQTSVFV SVYRIIAPIR NFHPDSRPTR IARPALLPRR ETRIASPKRI
101: PCTDPIVLPA CVYILLRPSR ALWRVASSDS ELMSSVGNGD GCCAGGSDGG QRHVLAVDDS SVDRAVIAGI LRSSKLRVTA VDSGKRALEL LGLEKKDVSM
201: IITDYWMPEM TGFELLKRVK ESSELKEIPV VIMSSENVPN RITRCLEEGA EEFLLKPIRP SDVSRVCSHD VIAYCVLIER DNRISNDTLH RFRGTASLDY
301: RYMSTSLVTI LDNNIFKPFV GDGGFAQTRK WSCFAGLDGD NGAGDDGGSG DRAGGGDGGD EGDGEDGSDE AEFGPVMKFE EVIRETEARG ASLPPDLLEA
401: AKSIGIRRVL LSRYLDLQGS WWPIGVAIRH CPLLRNRMLA DPSFLFKVAT EIVIDSCCAT FAEVQKRGKD FWTEFELYAA DLLVGIVVDI ALVGLLAPYV
501: RIGRPSVSAS TGFWGSLKRG LEALPSSVFE AERPGCKFTI RQRIGTYFYK GVLYGSVGFV CGIVGQGIAN LIMTAKRSVR KSDEDIPVPP LVKSAVLWGV
601: FLAVSSNTRY QIINGLECVV EASPFAKRIP PVAMAFTVGV RFANNIYGGM QFVDWARWSG VQ

Best Arabidopsis Sequence Match ( AT5G22790.1 )
(BLAST)

001: MSISLKISHI SSFSNDGFNS VKQCRVSQRF EIRSVCFRRS PGVESRRIHL NSDLSSRNLR NRCVGSDVVT GEISGRSIPD WAYSGVKDET LSDLEPELDD
101: GDGGDENGNN DGGGNGGNGD GGGGGGDGEG DDGEDEADKA EEKEFGPILK FEEVMKETER RGITLPEDML EAAKSVGIRK LFLLRYLDLQ GSVWPLGFLM
201: RSCAMLRNRM LADPSFLFKV GTEVAIDSCC ATFAEVQKRG EDFWSEFELY AADLLVGLVV DVALVGLLAP YARIGKPSVA STGLFKDLKR ACASLPSSVF
301: EAERPGCKFS VNQRIATFFY KGLLYGSVGF GCGLIGQGIA NLIMTAKRSV KKSEEDVPIP PLFESAALWG VFLGLSSNAR YQIINGLERV VEGSTAAKRI
401: PVVAMAFTVG VRFANNVYGG MQFVDWAKLS GVQ

Arabidopsis Description

RER1Protein RETICULATA-RELATED 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FGP9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.