Factsheet for PGSC0003DMT400062339

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 2
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g011340.2.1	Tomato	plastid	97.21	97.66
OQU75601	Sorghum	cytosol, mitochondrion, plasma membrane	13.49	78.38
EES11134	Sorghum	plastid	58.37	63.22
Os04t0524400-01	Rice	plastid	57.21	61.65
TraesCS2B01G394800.1	Wheat	golgi, plastid	56.05	61.32
PGSC0003DMT400001155	Potato	plastid	53.95	60.57
TraesCS2D01G374200.1	Wheat	plastid	55.35	60.56
TraesCS2A01G377800.1	Wheat	plastid	54.42	59.69
HORVU2Hr1G090260.1	Barley	plastid	55.58	58.58
Zm00001d002980_P001	Maize	plastid	54.19	58.25
Os03t0390900-01	Rice	plastid	20.7	42.79
GSMUA_Achr8P13730_001	Banana	extracellular, plasma membrane	54.42	35.35
PGSC0003DMT400016786	Potato	plastid	20.23	24.51
PGSC0003DMT400082409	Potato	plastid	23.02	24.09
PGSC0003DMT400017452	Potato	plastid	20.7	23.42
PGSC0003DMT400071250	Potato	plastid	19.77	23.35
PGSC0003DMT400061143	Potato	plastid	18.6	15.27
PGSC0003DMT400061517	Potato	mitochondrion	19.3	11.11

Protein Annotations

EnsemblPlants:PGSC0003DMT400062339	EnsemblPlantsGene:PGSC0003DMG400024261	EntrezGene:102591402	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:RETICULATA-related	PANTHER:PTHR31038	PANTHER:PTHR31038:SF5	PFAM:PF11891	PGSC:PGSC0003DMG400024261	RefSeq:XP_006340988.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0002960F88	UniProt:M1C8X3	MapMan:35.1	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400024261]

Coordinates

chr9:-:1227226..1233877

Molecular Weight (calculated)

45877.3 Da

IEP (calculated)

8.079

GRAVY (calculated)

0.022

Length

430 amino acids

Sequence
(BLAST)

001: MAGCSSGIRL SQFTSLKNEI FIMGSIKDSN FTFVKSQDFV GMRKIGYLVC QKNCKSRFLV KSSLNPEGKS ISGVSVETVL KENDTYSVGK DVSLLDADNG
101: GDGEGDLAVG NGGNGKYPGG GGGGGGGGGG GGDNGEGDEE EDEFGPLLKF EDVMREAEAR GATLPADMIE AAKSVGIRKL LLLRYLDLQG SAWLGAAMRS
201: SAMLRNRMLA DPSFLFKVGT EIVIDTTCAT VAEVQKRGKD FWAEFELYAA DMLVGVAVNV ALVGLLAPYA RIGQPSVSQG FVGRFQRAYG ALPSSVFEAE
301: RPGCRFTLNQ RVAAYFYKGI LYGFVGFGCG IIGQGIANMI MTAKRSVKKS EHDVPVPPLV KSALLWGVFL GVSSNTRLQI VTGLERLVES SPMGKQFPPV
401: AMAFTVGVRF ANNIYAGMQF VDWARWSGVQ

Best Arabidopsis Sequence Match ( AT2G37860.3 )
(BLAST)

001: MAGCAMNLQF SSVVKVRNEI SSFGICNRDF VFRDLAKAMK VPVLRIRGGS GRQRSRLFVV NMSQSPIEPQ SGGFAATEQI KGEGDNSILG KDNVRNLGTD
101: QLENLDIDGN VGDGFNGSDG NGGGGGGGNG GEGDGEGEDY EEKEFGPILK FEEVMKETEA RGATLPSDML EAAKNYGIRK VLLLRYLDLQ SSAGLLGFAI
201: RSWAMLRNRM LADPSFLFKI GAEIVIDSCC ATVAEVQKRG KDFWAEFELY VADLLVGTVV NIALVGMLAP YVRFGQPSAS PGFLGRMVFA YNALPSSVFE
301: AERPGCRFSA QQRLATYFYK GIMYGAVGFG CGIVGQGIAN LIMTAKRNIN KSEENIPVPP LIKSAALWGV FLSVSSNTRY QIINGLERVV EASPFAKKFP
401: PAAMAFTVGV RLANNIYGGM QFVDWARLSG CQ

Arabidopsis Description

REProtein RETICULATA, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:B9DFK5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.