Factsheet for PGSC0003DMT400061517

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g050620.2.1	Tomato	mitochondrion	96.12	96.12
HORVU5Hr1G020100.2	Barley	cytosol	21.95	69.79
VIT_13s0067g02090.t01	Wine grape	mitochondrion, plastid	68.81	68.62
Bra003229.1-P	Field mustard	plastid	65.73	66.26
CDX67635	Canola	plastid	65.86	66.22
CDY31998	Canola	plastid	65.86	66.22
KRG97671	Soybean	plastid	66.13	66.13
KRH31203	Soybean	plastid	65.73	65.64
AT3G56140.1	Thale cress	plastid	65.06	65.23
AT2G40400.1	Thale cress	plastid	63.72	64.76
CDX93185	Canola	plastid	62.52	63.45
CDY52926	Canola	plastid	62.78	63.12
Bra017008.1-P	Field mustard	plastid	62.65	62.99
GSMUA_Achr6P35670_001	Banana	plastid	58.9	62.06
EES03820	Sorghum	mitochondrion	59.57	60.63
TraesCS3D01G341400.1	Wheat	plastid	58.37	60.56
TraesCS3A01G347800.1	Wheat	plastid	58.37	60.56
TraesCS3B01G379700.2	Wheat	mitochondrion, plastid	58.23	60.33
Zm00001d043023_P002	Maize	plastid	58.9	59.62
GSMUA_AchrUn_...	Banana	plastid	59.84	59.6
HORVU3Hr1G088220.12	Barley	mitochondrion, plastid	57.97	59.15
Os01t0826900-01	Rice	cytosol, endoplasmic reticulum, plastid	58.5	58.5
Zm00001d010606_P004	Maize	plastid	49.13	57.08
TraesCS1D01G293100.1	Wheat	plastid	54.62	55.36
TraesCS1A01G298100.1	Wheat	plastid	54.22	55.33
TraesCS1B01G307600.1	Wheat	plastid	54.35	55.16
KXG22205	Sorghum	plastid	52.74	53.1
HORVU1Hr1G070330.11	Barley	cytosol	53.95	33.58
PGSC0003DMT400017452	Potato	plastid	16.87	33.16
PGSC0003DMT400082409	Potato	plastid	16.87	30.66
PGSC0003DMT400016786	Potato	plastid	11.91	25.07
PGSC0003DMT400071250	Potato	plastid	11.38	23.35
PGSC0003DMT400001155	Potato	plastid	10.17	19.84
PGSC0003DMT400062339	Potato	mitochondrion	11.11	19.3
PGSC0003DMT400061143	Potato	plastid	12.58	17.94

Protein Annotations

EnsemblPlants:PGSC0003DMT400061517	EnsemblPlantsGene:PGSC0003DMG400023943	EntrezGene:102605434	Gene3D:3.40.50.11550	InterPro:Cofac_haem-bd_dom	InterPro:RETICULATA-related
ncoils:Coil	PANTHER:PTHR31620	PANTHER:PTHR31620:SF2	PFAM:PF04187	PFAM:PF11891	PGSC:PGSC0003DMG400023943
RefSeq:XP_015166812.1	RefSeq:XP_015166813.1	SEG:seg	SUPFAM:SSF159501	UniParc:UPI00029643D8	UniProt:M1C7M3
MapMan:35.1	:	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400023943]

Coordinates

chr6:+:30534574..30542045

Molecular Weight (calculated)

83024.7 Da

IEP (calculated)

8.562

GRAVY (calculated)

-0.206

Length

747 amino acids

Sequence
(BLAST)

001: MKANSGRSIS SKSLHLYVPP ATLLRRKYLI RRRLNFPRCL VHEHSHVSFS VRCSQTPADG IDNSDELILK QNSSTTRRNV LLMPLLTIGV CALRSAIARA
101: DDKPPPESTP QPPVTTVEAP PPDPVVKAEE VINSRIYDAT VIGEPLALGK DKKKVWEKLM NARVVYLGEA EQVPTQDDKE VELEIVKNLR KRCAEAERSI
201: SLALEAFPSN LQEQLNQYLA KRIDGESLKS YVAHWPTQYW HDYEPLLTYC RENGVRLVAC GLPLEVLRTV QAEGIRGLSK ADRKKYAPPA GSGFISGFSS
301: MSRRSSVDVN MLNQPTPFGP SSYLSAQAKV VEEYNMSQIV LKAVMDDGTA GMLVVVTGAT HVMYGSRGTG VPARISRKIQ KKNQIVILLD PERQWLRREG
401: EVPVADFLWY SAARPCSRNC FDRAEIARVM NAAGRRRDAL PQDLQNGLDL GVVPPEVLQN FFDLEQYPFI SELTDRFQGF RERLLADPKF LHRLAIEESI
501: SITTTLLAQY EKRKENFFEE IDYVITDTVR GIVVDFFTVW LPAPTISFLS VTDDVDAPES IGALKGLLGS IPDNAFQKSL VGKDWDVSHR VASVLVGGLK
601: LAGVGFVSSI GAVASSNILF AMRKVLNPTF TTVQKNKRSP ILKTALVYSS FLGTSANLRY QVIAGLVEHR IADKFSDQTL LVNMLSFVVR TINSYWGTQQ
701: WIDLARVTGL QARKSEQVSD LAPDSANPTA VGCKTPEDTN TDEINSQ

Best Arabidopsis Sequence Match ( AT2G40400.1 )
(BLAST)

001: MKPTTNGGLL ASQSSSSFSF PRFRGQLPII FSANNNQKKK NLPNPNVVTL CLHSHSNVSS SQIAVTRRAI LVAPPLLAAA ASLFLSISSA ASAETSAESV
101: ALPPVATAPP PPPVEKEEAI TSRIYDASVL GEPMAVGKDK KRVWEKLLNA RIVYLGEAEQ VPTRDDKVLE LEIVRNLRKR CIESDRQLSL ALEAFPLDLQ
201: EQLNQYMDKR MDGEVLKSYV SHWPVQRWQE YEPLLSYCRD NGVKLIACGT PLKVLRTVQA EGIRGLSESE RKLYTPPAGS GFISGFTSFS RSSSLNMNPL
301: TQIVPFGPSS YLSAQARVVE DHTMSQVIVQ AVADGGGTGM LVVVTGANHV EYGSRGTGLP ARISRKIPKK SQLVVLLDPE RQFLRKEGES PVADFLWYSA
401: ARPCSRNCFD RAEIARVMNA AGRRRDALPQ DIQKGLDLGL VSPEILQNFF DLEQYPLISE LTQRFQGFRE RLLADPKFLN RLAIEEAISI TTTLVAQYEK
501: RKENFFEELD YVITDSVRAS VVDFFTVWLP APTLSFISYA DETIGPNSID ALRGLLGSIP DNAFQKSLGG QEWTLSLRIA SVIIGGLKLA GVGVVSSFAA
601: VGSSNALYAI RKFIKPELGV GEQAKRSPML KTALVYGGYL GTSSNIRYQI IAGLIEHRIS DELSSQPLLV NMISFVVRVA NSYFGTQQWI DLARSTGLQT
701: QKSVTTSNQI PEVASQSTVE YSTTEEASMD DLKNQ

Arabidopsis Description

RER5Protein RETICULATA-RELATED 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SIY5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.