Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G298100.1 | Wheat | plastid | 95.65 | 96.17 |
| TraesCS1D01G293100.1 | Wheat | plastid | 95.52 | 95.39 |
| Zm00001d010606_P004 | Maize | plastid | 61.55 | 70.45 |
| KXG22205 | Sorghum | plastid | 69.57 | 69.0 |
| TraesCS3B01G379700.2 | Wheat | mitochondrion, plastid | 66.44 | 67.82 |
| GSMUA_Achr6P35670_001 | Banana | plastid | 61.01 | 63.33 |
| GSMUA_AchrUn_... | Banana | plastid | 63.18 | 62.0 |
| Bra003229.1-P | Field mustard | plastid | 56.11 | 55.74 |
| AT3G56140.1 | Thale cress | plastid | 56.39 | 55.7 |
| CDX67635 | Canola | plastid | 56.11 | 55.59 |
| CDY31998 | Canola | plastid | 56.11 | 55.59 |
| VIT_13s0067g02090.t01 | Wine grape | mitochondrion, plastid | 56.52 | 55.54 |
| CDX93185 | Canola | plastid | 54.76 | 54.76 |
| KRG97671 | Soybean | plastid | 55.57 | 54.75 |
| AT2G40400.1 | Thale cress | plastid | 54.62 | 54.69 |
| KRH31203 | Soybean | plastid | 55.57 | 54.68 |
| Solyc06g050620.2.1 | Tomato | mitochondrion | 55.3 | 54.48 |
| Bra017008.1-P | Field mustard | plastid | 54.89 | 54.37 |
| PGSC0003DMT400061517 | Potato | mitochondrion | 55.16 | 54.35 |
| CDY52926 | Canola | plastid | 54.62 | 54.1 |
| HORVU1Hr1G070330.11 | Barley | cytosol | 83.83 | 51.42 |
| TraesCS1B01G254100.1 | Wheat | unclear | 16.58 | 31.94 |
| TraesCS3B01G368200.1 | Wheat | golgi, plastid, unclear | 11.96 | 25.21 |
| TraesCS2B01G394800.1 | Wheat | golgi, plastid | 13.45 | 25.19 |
| TraesCS5B01G110100.1 | Wheat | golgi | 15.35 | 21.24 |
| TraesCS2B01G261500.1 | Wheat | golgi, unclear | 11.96 | 20.56 |
| TraesCS7B01G247100.1 | Wheat | plastid | 13.45 | 19.88 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G307600.1 | EnsemblPlantsGene:TraesCS1B01G307600 | Gene3D:3.40.50.11550 | InterPro:Cofac_haem-bd_dom | InterPro:IPR006311 | InterPro:RETICULATA-related |
| InterPro:TAT_signal | PANTHER:PTHR31620 | PANTHER:PTHR31620:SF6 | PFAM:PF04187 | PFAM:PF11891 | PFscan:PS51318 |
| SEG:seg | SUPFAM:SSF159501 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr1B:+:530473898..530478504
Molecular Weight (calculated)
79645.9 Da
IEP (calculated)
8.682
GRAVY (calculated)
-0.228
Length
736 amino acids
Sequence
(BLAST)
(BLAST)
001: MSHAPLRNAA ASFKPLLPSP RSRLITKPLT SGAAPSPSSS SPRRSVSASA SSRRDFLLLV PSLAVASAVL RAAPAAAADD QASPPPPAES PTPAPPPPTK
101: EKEPEGDESA VSRVYDATVI GEPQAVGREA KGRVWDKLAA ARVVYLGEAE LVPDPDDRIL ELEIVTKLAA RCAEADKRLA LALEAFPCDL QQQLDDFMSG
201: RIDGSILKLY TSHWPSERWQ EYEPLLNFCR DNGIKLVASG TPLQVKRTVQ AEGIGGLSKA ERKEYAPPAG SGFISGFRSG RSFIENITST RDSPFGPNSY
301: LSAQARVVDD YTMSQIVMKE LNGRDPPGLL IVVAGASHLI YGSRGTGVPA RVSKKLPKKG QVVVLLDPER QSIRREGQIP VADFLWYSAA KTCTRNCFDR
401: AEIARVMNAA GRRPEALPQD LQKGIDLGVV SPEILQNFFD LDKNPVMTEL IHRFQGFRER LLADPKFLQR LAIEEAISIS TTLLAQYERR KGRFFEEIDY
501: VLTDTIRGSV VDFFTVWLPA PTISVLSFTD DDSGQSLGFV KGLLGSLPDN AFQKNTFGRN WNMNQRVAAV IVGGLKLAGV GFISGIGAGV SSDLLYAARG
601: LLKPSASVGA GRKRAPVLKS AAVYSCFLGT SANLRYQIIA GLLEHRLGES LATQYNQPLL AGLLSFVART VNSYLGTQQW VDLARYTGVQ KIQEQLPSDE
701: VTTPPETSQL EGGRTDVQNP NDSSSSNADR SSDPTK
101: EKEPEGDESA VSRVYDATVI GEPQAVGREA KGRVWDKLAA ARVVYLGEAE LVPDPDDRIL ELEIVTKLAA RCAEADKRLA LALEAFPCDL QQQLDDFMSG
201: RIDGSILKLY TSHWPSERWQ EYEPLLNFCR DNGIKLVASG TPLQVKRTVQ AEGIGGLSKA ERKEYAPPAG SGFISGFRSG RSFIENITST RDSPFGPNSY
301: LSAQARVVDD YTMSQIVMKE LNGRDPPGLL IVVAGASHLI YGSRGTGVPA RVSKKLPKKG QVVVLLDPER QSIRREGQIP VADFLWYSAA KTCTRNCFDR
401: AEIARVMNAA GRRPEALPQD LQKGIDLGVV SPEILQNFFD LDKNPVMTEL IHRFQGFRER LLADPKFLQR LAIEEAISIS TTLLAQYERR KGRFFEEIDY
501: VLTDTIRGSV VDFFTVWLPA PTISVLSFTD DDSGQSLGFV KGLLGSLPDN AFQKNTFGRN WNMNQRVAAV IVGGLKLAGV GFISGIGAGV SSDLLYAARG
601: LLKPSASVGA GRKRAPVLKS AAVYSCFLGT SANLRYQIIA GLLEHRLGES LATQYNQPLL AGLLSFVART VNSYLGTQQW VDLARYTGVQ KIQEQLPSDE
701: VTTPPETSQL EGGRTDVQNP NDSSSSNADR SSDPTK
001: MKPTTNGGLL ASQSSSSFSF PRFRGQLPII FSANNNQKKK NLPNPNVVTL CLHSHSNVSS SQIAVTRRAI LVAPPLLAAA ASLFLSISSA ASAETSAESV
101: ALPPVATAPP PPPVEKEEAI TSRIYDASVL GEPMAVGKDK KRVWEKLLNA RIVYLGEAEQ VPTRDDKVLE LEIVRNLRKR CIESDRQLSL ALEAFPLDLQ
201: EQLNQYMDKR MDGEVLKSYV SHWPVQRWQE YEPLLSYCRD NGVKLIACGT PLKVLRTVQA EGIRGLSESE RKLYTPPAGS GFISGFTSFS RSSSLNMNPL
301: TQIVPFGPSS YLSAQARVVE DHTMSQVIVQ AVADGGGTGM LVVVTGANHV EYGSRGTGLP ARISRKIPKK SQLVVLLDPE RQFLRKEGES PVADFLWYSA
401: ARPCSRNCFD RAEIARVMNA AGRRRDALPQ DIQKGLDLGL VSPEILQNFF DLEQYPLISE LTQRFQGFRE RLLADPKFLN RLAIEEAISI TTTLVAQYEK
501: RKENFFEELD YVITDSVRAS VVDFFTVWLP APTLSFISYA DETIGPNSID ALRGLLGSIP DNAFQKSLGG QEWTLSLRIA SVIIGGLKLA GVGVVSSFAA
601: VGSSNALYAI RKFIKPELGV GEQAKRSPML KTALVYGGYL GTSSNIRYQI IAGLIEHRIS DELSSQPLLV NMISFVVRVA NSYFGTQQWI DLARSTGLQT
701: QKSVTTSNQI PEVASQSTVE YSTTEEASMD DLKNQ
101: ALPPVATAPP PPPVEKEEAI TSRIYDASVL GEPMAVGKDK KRVWEKLLNA RIVYLGEAEQ VPTRDDKVLE LEIVRNLRKR CIESDRQLSL ALEAFPLDLQ
201: EQLNQYMDKR MDGEVLKSYV SHWPVQRWQE YEPLLSYCRD NGVKLIACGT PLKVLRTVQA EGIRGLSESE RKLYTPPAGS GFISGFTSFS RSSSLNMNPL
301: TQIVPFGPSS YLSAQARVVE DHTMSQVIVQ AVADGGGTGM LVVVTGANHV EYGSRGTGLP ARISRKIPKK SQLVVLLDPE RQFLRKEGES PVADFLWYSA
401: ARPCSRNCFD RAEIARVMNA AGRRRDALPQ DIQKGLDLGL VSPEILQNFF DLEQYPLISE LTQRFQGFRE RLLADPKFLN RLAIEEAISI TTTLVAQYEK
501: RKENFFEELD YVITDSVRAS VVDFFTVWLP APTLSFISYA DETIGPNSID ALRGLLGSIP DNAFQKSLGG QEWTLSLRIA SVIIGGLKLA GVGVVSSFAA
601: VGSSNALYAI RKFIKPELGV GEQAKRSPML KTALVYGGYL GTSSNIRYQI IAGLIEHRIS DELSSQPLLV NMISFVVRVA NSYFGTQQWI DLARSTGLQT
701: QKSVTTSNQI PEVASQSTVE YSTTEEASMD DLKNQ
Arabidopsis Description
RER5Protein RETICULATA-RELATED 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SIY5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.