Factsheet for Solyc06g050620.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
nucleus 1
mitochondrion 5
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400061517	Potato	mitochondrion	96.12	96.12
HORVU5Hr1G020100.2	Barley	cytosol	22.36	71.06
VIT_13s0067g02090.t01	Wine grape	mitochondrion, plastid	68.67	68.49
Bra003229.1-P	Field mustard	plastid	65.46	65.99
CDX67635	Canola	plastid	65.6	65.95
CDY31998	Canola	plastid	65.6	65.95
KRH31203	Soybean	plastid	65.86	65.78
KRG97671	Soybean	plastid	65.6	65.6
AT3G56140.1	Thale cress	plastid	64.79	64.97
AT2G40400.1	Thale cress	plastid	63.32	64.35
CDX93185	Canola	plastid	61.85	62.77
CDY52926	Canola	plastid	62.25	62.58
GSMUA_Achr6P35670_001	Banana	plastid	59.17	62.34
Bra017008.1-P	Field mustard	plastid	61.98	62.31
TraesCS3D01G341400.1	Wheat	plastid	58.63	60.83
TraesCS3A01G347800.1	Wheat	plastid	58.63	60.83
TraesCS3B01G379700.2	Wheat	mitochondrion, plastid	58.5	60.61
EES03820	Sorghum	mitochondrion	59.44	60.49
GSMUA_AchrUn_...	Banana	plastid	60.51	60.27
Zm00001d043023_P002	Maize	plastid	58.9	59.62
HORVU3Hr1G088220.12	Barley	mitochondrion, plastid	58.1	59.29
Os01t0826900-01	Rice	cytosol, endoplasmic reticulum, plastid	58.37	58.37
Zm00001d010606_P004	Maize	plastid	49.4	57.39
TraesCS1D01G293100.1	Wheat	plastid	54.75	55.5
TraesCS1A01G298100.1	Wheat	plastid	54.35	55.46
TraesCS1B01G307600.1	Wheat	plastid	54.48	55.3
KXG22205	Sorghum	plastid	52.88	53.23
HORVU1Hr1G070330.11	Barley	cytosol	54.22	33.75
Solyc01g087750.2.1	Tomato	nucleus, plastid	16.33	32.11
Solyc11g065490.1.1	Tomato	plastid	15.93	28.81
Solyc09g031940.1.1	Tomato	plastid	11.65	24.37
Solyc10g074880.1.1	Tomato	plastid	10.84	22.56
Solyc11g066740.1.1	Tomato	plastid	10.31	20.1
Solyc10g045620.1.1	Tomato	cytosol	8.7	19.17
Solyc09g011340.2.1	Tomato	plastid	10.84	18.93
Solyc01g104270.2.1	Tomato	plastid	12.58	17.94
Solyc10g045630.1.1	Tomato	plastid	5.89	16.79

Protein Annotations

EnsemblPlants:Solyc06g050620.2.1	EnsemblPlantsGene:Solyc06g050620.2	Gene3D:3.40.50.11550	InterPro:Cofac_haem-bd_dom	InterPro:RETICULATA-related	PANTHER:PTHR31620
PANTHER:PTHR31620:SF2	PFAM:PF04187	PFAM:PF11891	SEG:seg	SUPFAM:SSF159501	UniParc:UPI0002766B26
UniProt:K4C5K6	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr6:+:33359501..33366981

Molecular Weight (calculated)

83106.8 Da

IEP (calculated)

8.567

GRAVY (calculated)

-0.194

Length

747 amino acids

Sequence
(BLAST)

001: MKANSGRTIS SKSVHLYVPP ATLLRRKFLI RRRLNFPRCL VHEHSHVSFS VRCSQSPTDA IDNSDELIPK QKSSTTRRNV LLMPLLTIGV CALRSAIARA
101: DDKPPPESTP QPPVTTVEAP TPDPVVKAEE VINSRIYDAT VIGEPLALGK DKKKVWEKLM NARVVYLGEA EQVPTQDDKE VELEIVKNLR KRCAEAERPI
201: SLALEAFPSN LQEQLNQYLA KRIDGESLKS YVVHWPTQYW HEYEPLLTYC RENGVRLVAC GLPLEVLRTV QAEGIRGLSK ADRKKYAPPA GSGFISGFSS
301: MSRRSAADVN MLNQPTPFGP SSYLSAQARV VEEYNMSQIV LKAVMDDGAA GMLVVVTGAT HVMYGSRGTG VPARISRKIQ KKNQIVILLD PERQWLRREG
401: EVPVADLLWY SAARPCSRNC FDRAEIARVM NAAGRRRDAL PQDLQNGLDL GVVSPEVLQN FFDLEQYPFI SELTDRFQGF RERLLADPKF LHRLAIEESI
501: SITTTLLAQY EKRKENFFEE IDYVITDTVR GIVVDFFTVW LPAPTISFLS VTDDVDVPES IGALKGLLGS IPDNAFQKSV VGKDWDVSHR VASVLVGGLK
601: LAGVGFVSSI GAVASSNILF AMRKVFNPTF TAVQKNKRSP ILKTALVYSS FLGTSANLRY QVIAGLVEHR LADQFSDQTL FVNMLSFVVR TINSYWGTQQ
701: WIDLARVTGL QARKSERVPD LVPDSANPTA VGCNTPEDTN TDEINSQ

Best Arabidopsis Sequence Match ( AT3G56140.1 )
(BLAST)

001: MKLTTNDLFA SQPLFHCPCS SSSRPRRRRF YGLHFPINLT SEKNNSLSIV ALSDSDLPSR TAFSRRAFLL APPLLVSAAS LFLKPSVSLA SEESSSATVT
101: SPAESAAPPP PPATTTPSPP PPVNKEETIT SRIYDATAIG EPMAMGKDKK KVWEKLLNAR VVYLGEAEQV PTKDDKELEL EIVRNLRKRC VESERQISVA
201: LEAFPLDLQD QLNQYMDKRM DGETLKSYVT HWPAQRWQEY EPLLSYCRDN SVRLIACGTP LKVLRTVQAE GIRGLSKSER KLYTPPAGSG FISGFSSFSR
301: RSTFDMSLPT QIVPFGPSSY LSAQARVVED HTMSQVILQA VADGGGTGLL LVVTGASHVE YGSRGTGLPA RISRKFPKKN QVVVLLDPER QFLRREGETP
401: VADFLWYSAA RPCSRNCFDR AEIARVMNAA GRRRDALPPD IQNGLDLGLV SPEVLQNLFD LEQYPLISEL TQRFQGFRER LLADPKFLNR LAIEEAISIT
501: TTLIAQYEKR KENFFEEIDY VITDTVRGSV VDFFTVWLPA PTLSFLSYAD ETTGPDSIDA LRGLLGSIPD NAFQKSLAGR EWNLNLRIAS VIVGGLKLAG
601: VGVVSSFAAV GASNALNIAR KVIKPELVVA EKPKRSPLLK TAMVYGGFLG TSANLRYQII AGLIEHRLSD ELSSQPLLVN AISFVVRTLN SYFGTQQWID
701: LARSTGLQTQ KSIPASKEIS EALEEPTVEC DTTTEEESID KLNNQ

Arabidopsis Description

RER6Protein RETICULATA-RELATED 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8RWG3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.