Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS1A01G298100.1 | Wheat | plastid | 95.25 | 95.9 |
TraesCS1B01G307600.1 | Wheat | plastid | 95.39 | 95.52 |
Zm00001d010606_P004 | Maize | plastid | 61.74 | 70.76 |
TraesCS3D01G341400.1 | Wheat | plastid | 67.71 | 69.31 |
KXG22205 | Sorghum | plastid | 69.34 | 68.87 |
GSMUA_Achr6P35670_001 | Banana | plastid | 61.06 | 63.47 |
GSMUA_AchrUn_... | Banana | plastid | 62.82 | 61.73 |
Bra003229.1-P | Field mustard | plastid | 56.72 | 56.41 |
CDY31998 | Canola | plastid | 56.72 | 56.26 |
CDX67635 | Canola | plastid | 56.72 | 56.26 |
AT3G56140.1 | Thale cress | plastid | 56.72 | 56.11 |
VIT_13s0067g02090.t01 | Wine grape | mitochondrion, plastid | 56.58 | 55.67 |
AT2G40400.1 | Thale cress | plastid | 55.09 | 55.24 |
KRH31203 | Soybean | plastid | 56.04 | 55.21 |
CDX93185 | Canola | plastid | 55.09 | 55.16 |
KRG97671 | Soybean | plastid | 55.9 | 55.15 |
Bra017008.1-P | Field mustard | plastid | 55.36 | 54.91 |
Solyc06g050620.2.1 | Tomato | mitochondrion | 55.5 | 54.75 |
CDY52926 | Canola | plastid | 55.09 | 54.64 |
PGSC0003DMT400061517 | Potato | mitochondrion | 55.36 | 54.62 |
HORVU1Hr1G070330.11 | Barley | cytosol | 84.12 | 51.67 |
TraesCS1D01G242600.1 | Wheat | golgi | 16.55 | 31.77 |
TraesCS2D01G374200.1 | Wheat | plastid | 13.16 | 24.68 |
TraesCS3D01G330200.1 | Wheat | plastid | 11.8 | 24.51 |
TraesCS2D01G241700.1 | Wheat | golgi, unclear | 12.08 | 20.79 |
TraesCS5D01G123000.1 | Wheat | plastid | 14.79 | 20.41 |
TraesCS7D01G343200.1 | Wheat | plastid | 13.3 | 19.68 |
Protein Annotations
EnsemblPlants:TraesCS1D01G293100.1 | EnsemblPlantsGene:TraesCS1D01G293100 | Gene3D:3.40.50.11550 | InterPro:Cofac_haem-bd_dom | InterPro:IPR006311 | InterPro:RETICULATA-related |
InterPro:TAT_signal | PANTHER:PTHR31620 | PANTHER:PTHR31620:SF6 | PFAM:PF04187 | PFAM:PF11891 | PFscan:PS51318 |
SEG:seg | SUPFAM:SSF159501 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr1D:-:392134171..392139034
Molecular Weight (calculated)
79875.0 Da
IEP (calculated)
8.508
GRAVY (calculated)
-0.248
Length
737 amino acids
Sequence
(BLAST)
(BLAST)
001: MTHAPLRNAA ASFKPLLPSP RSRLSTKPLN SGASPSSSSP RRSVSASASS RRDLLLLIPS LAAASAVLRA APAAAADDQA SPPPPPAESP APAPLPPPKE
101: KEPDGDESAV SRVYDATVIG EPQAVRREAK GRVWDKLAAA RVVYLGEAEL VPDPDDRVLE LEIVTKLAAR CADAERRMSL ALEAFPCDLQ QQLDDFMSGR
201: IDGSILKLYT SHWPSERWQE YEPLLNFCRD NGIKLVASGT PLQVKRTVQA EGIGGLSKAE RKEYAPPAGS GFISGFRSGR SFIENITSTR DSPFGPNSYL
301: SAQARVVDDY TMSQIVMKEL NGRDPPGLLI VVAGASHLIY GSRGTGVPAR VSKKLPKKGQ VVVLLDPERQ SIRREGQIPV ADFLWYSAAK TCTRNCFDRA
401: EIARVMNAAG RRPEALPQDL QKGIDLGVVS PEILQNFFDL DKNPVMTELI HRFQGFRERL LADPKFLQRL AIEEAISIST TLLAQYERRK GRFFEEIDYV
501: LTDTIRGSVV DFFTVWLPAP TISVLSFTDN DSGQSLGFVR GLLGSLPDNA FQKNTFGQNW NMNQRVAAVI VGGLKLAGVG FISSVGAGVS SDLLYAARGV
601: LKPSVSVGAG RKRAPVLKSA AVYSCFLGTS ANLRYQIIAG LLEHRLGESL ATQYNQPLLA GLLSFVARTA NSYLGTQQWV DLARYTGIQK IQEQLPSDEV
701: TAPPETSQLE DGRTDVQNPD ESSSSSSNAD RSSDPTK
101: KEPDGDESAV SRVYDATVIG EPQAVRREAK GRVWDKLAAA RVVYLGEAEL VPDPDDRVLE LEIVTKLAAR CADAERRMSL ALEAFPCDLQ QQLDDFMSGR
201: IDGSILKLYT SHWPSERWQE YEPLLNFCRD NGIKLVASGT PLQVKRTVQA EGIGGLSKAE RKEYAPPAGS GFISGFRSGR SFIENITSTR DSPFGPNSYL
301: SAQARVVDDY TMSQIVMKEL NGRDPPGLLI VVAGASHLIY GSRGTGVPAR VSKKLPKKGQ VVVLLDPERQ SIRREGQIPV ADFLWYSAAK TCTRNCFDRA
401: EIARVMNAAG RRPEALPQDL QKGIDLGVVS PEILQNFFDL DKNPVMTELI HRFQGFRERL LADPKFLQRL AIEEAISIST TLLAQYERRK GRFFEEIDYV
501: LTDTIRGSVV DFFTVWLPAP TISVLSFTDN DSGQSLGFVR GLLGSLPDNA FQKNTFGQNW NMNQRVAAVI VGGLKLAGVG FISSVGAGVS SDLLYAARGV
601: LKPSVSVGAG RKRAPVLKSA AVYSCFLGTS ANLRYQIIAG LLEHRLGESL ATQYNQPLLA GLLSFVARTA NSYLGTQQWV DLARYTGIQK IQEQLPSDEV
701: TAPPETSQLE DGRTDVQNPD ESSSSSSNAD RSSDPTK
001: MKPTTNGGLL ASQSSSSFSF PRFRGQLPII FSANNNQKKK NLPNPNVVTL CLHSHSNVSS SQIAVTRRAI LVAPPLLAAA ASLFLSISSA ASAETSAESV
101: ALPPVATAPP PPPVEKEEAI TSRIYDASVL GEPMAVGKDK KRVWEKLLNA RIVYLGEAEQ VPTRDDKVLE LEIVRNLRKR CIESDRQLSL ALEAFPLDLQ
201: EQLNQYMDKR MDGEVLKSYV SHWPVQRWQE YEPLLSYCRD NGVKLIACGT PLKVLRTVQA EGIRGLSESE RKLYTPPAGS GFISGFTSFS RSSSLNMNPL
301: TQIVPFGPSS YLSAQARVVE DHTMSQVIVQ AVADGGGTGM LVVVTGANHV EYGSRGTGLP ARISRKIPKK SQLVVLLDPE RQFLRKEGES PVADFLWYSA
401: ARPCSRNCFD RAEIARVMNA AGRRRDALPQ DIQKGLDLGL VSPEILQNFF DLEQYPLISE LTQRFQGFRE RLLADPKFLN RLAIEEAISI TTTLVAQYEK
501: RKENFFEELD YVITDSVRAS VVDFFTVWLP APTLSFISYA DETIGPNSID ALRGLLGSIP DNAFQKSLGG QEWTLSLRIA SVIIGGLKLA GVGVVSSFAA
601: VGSSNALYAI RKFIKPELGV GEQAKRSPML KTALVYGGYL GTSSNIRYQI IAGLIEHRIS DELSSQPLLV NMISFVVRVA NSYFGTQQWI DLARSTGLQT
701: QKSVTTSNQI PEVASQSTVE YSTTEEASMD DLKNQ
101: ALPPVATAPP PPPVEKEEAI TSRIYDASVL GEPMAVGKDK KRVWEKLLNA RIVYLGEAEQ VPTRDDKVLE LEIVRNLRKR CIESDRQLSL ALEAFPLDLQ
201: EQLNQYMDKR MDGEVLKSYV SHWPVQRWQE YEPLLSYCRD NGVKLIACGT PLKVLRTVQA EGIRGLSESE RKLYTPPAGS GFISGFTSFS RSSSLNMNPL
301: TQIVPFGPSS YLSAQARVVE DHTMSQVIVQ AVADGGGTGM LVVVTGANHV EYGSRGTGLP ARISRKIPKK SQLVVLLDPE RQFLRKEGES PVADFLWYSA
401: ARPCSRNCFD RAEIARVMNA AGRRRDALPQ DIQKGLDLGL VSPEILQNFF DLEQYPLISE LTQRFQGFRE RLLADPKFLN RLAIEEAISI TTTLVAQYEK
501: RKENFFEELD YVITDSVRAS VVDFFTVWLP APTLSFISYA DETIGPNSID ALRGLLGSIP DNAFQKSLGG QEWTLSLRIA SVIIGGLKLA GVGVVSSFAA
601: VGSSNALYAI RKFIKPELGV GEQAKRSPML KTALVYGGYL GTSSNIRYQI IAGLIEHRIS DELSSQPLLV NMISFVVRVA NSYFGTQQWI DLARSTGLQT
701: QKSVTTSNQI PEVASQSTVE YSTTEEASMD DLKNQ
Arabidopsis Description
RER5Protein RETICULATA-RELATED 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SIY5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.