Factsheet for VIT_13s0067g02090.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

nucleus 1
plastid 3
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G020100.2	Barley	cytosol	22.7	72.34
KRH31203	Soybean	plastid	71.3	71.39
KRG97671	Soybean	plastid	71.16	71.35
PGSC0003DMT400061517	Potato	mitochondrion	68.62	68.81
Solyc06g050620.2.1	Tomato	mitochondrion	68.49	68.67
GSMUA_Achr6P35670_001	Banana	plastid	63.55	67.14
AT2G40400.1	Thale cress	plastid	65.82	67.07
Bra003229.1-P	Field mustard	plastid	66.36	67.07
CDX67635	Canola	plastid	66.49	67.03
AT3G56140.1	Thale cress	plastid	66.22	66.58
CDY31998	Canola	plastid	65.95	66.49
CDX93185	Canola	plastid	64.89	66.03
CDY52926	Canola	plastid	64.89	65.41
Bra017008.1-P	Field mustard	plastid	64.89	65.41
GSMUA_AchrUn_...	Banana	plastid	64.49	64.4
TraesCS3A01G347800.1	Wheat	plastid	59.81	62.22
TraesCS3B01G379700.2	Wheat	mitochondrion, plastid	59.81	62.14
TraesCS3D01G341400.1	Wheat	plastid	59.68	62.08
EES03820	Sorghum	mitochondrion	60.61	61.85
Zm00001d043023_P002	Maize	plastid	60.35	61.25
Os01t0826900-01	Rice	cytosol, endoplasmic reticulum, plastid	60.61	60.78
HORVU3Hr1G088220.12	Barley	mitochondrion, plastid	58.74	60.11
Zm00001d010606_P004	Maize	plastid	51.54	60.03
TraesCS1A01G298100.1	Wheat	plastid	55.54	56.83
TraesCS1D01G293100.1	Wheat	plastid	55.67	56.58
TraesCS1B01G307600.1	Wheat	plastid	55.54	56.52
KXG22205	Sorghum	plastid	55.67	56.2
HORVU1Hr1G070330.11	Barley	cytosol	55.01	34.33
VIT_06s0004g02400.t01	Wine grape	plastid	17.49	34.11
VIT_13s0064g00160.t01	Wine grape	plastid	15.75	31.05
VIT_08s0056g00560.t01	Wine grape	plastid	11.21	23.93
VIT_08s0007g01250.t01	Wine grape	cytosol	11.48	23.06
VIT_12s0034g01370.t01	Wine grape	plastid	13.89	19.96
VIT_06s0061g01160.t01	Wine grape	plastid	10.81	19.8
VIT_12s0034g01330.t01	Wine grape	cytosol	5.34	19.14

Protein Annotations

EntrezGene:100253544	wikigene:100253544	Gene3D:3.40.50.11550	MapMan:35.1	EMBL:AM476435	ProteinID:CAN64033
ProteinID:CAN64033.1	ProteinID:CCB49822	ProteinID:CCB49822.1	InterPro:Cofac_haem-bd_dom	UniProt:F6HC98	EMBL:FN595514
EntrezGene:LOC100253544	wikigene:LOC100253544	PFAM:PF04187	PFAM:PF11891	PANTHER:PTHR31620	PANTHER:PTHR31620:SF2
InterPro:RETICULATA-related	SUPFAM:SSF159501	UniParc:UPI0001984616	ArrayExpress:VIT_13s0067g02090	EnsemblPlantsGene:VIT_13s0067g02090	EnsemblPlants:VIT_13s0067g02090.t01
unigene:Vvi.13925	RefSeq:XP_002278231	RefSeq:XP_002278231.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr13:+:1186098..1192718

Molecular Weight (calculated)

83557.0 Da

IEP (calculated)

8.773

GRAVY (calculated)

-0.256

Length

749 amino acids

Sequence
(BLAST)

001: MKPHTHRGFG SGSVFVSSAS GRRFDLQGNH IRKAFFAGNH VFRRISTGKR GGVDVAVRCC RSPVEKREPS CSDRDRLFEV GTRREVLVTP FLAIGAYSLR
101: SVVARAEEGT EAVMPAAASG TVPAAAEKKM EEAIVSRIYD ATVIGEPMAL GKDKRKVWEK LMNARIVYLG EAEQVPIRDD RELELEIVKK LRKRCAENER
201: PLSLALEAFP CNLQEPLNQY MDYRIDGETL KSYASHWPPQ RWQEYEPLLS YCRDNGVRLV ACGTPLEVLR TVQAEGIRGL SKAERRKYAP PAGSGFISGF
301: TSISRKSSID TNSPNQSVPF GPSSYLSAQA RVVEDHTMSQ IILQEMVDGG TTGMLVVVTG ASHVMYGSRG TGLPARISKK LQKRNQTVIL LDPERQYIRR
401: EGEVPVADFL WYSAARPCSR NCFDRAEVAR VMNAAGRRRD ALPQDLQKGL DLGLVSPEVL QNFFDLEQYP LISELTHRFQ GFRERLLADP KFLHRLAIEE
501: VISITTTLLA QYERRKENFF EELDYVITDT LRGSVVDFFT VWLPAPTLSF LSYADEMNAP DGIDALKGLL GSIPDNAFQK NLAGKDWNLS HRVASVLFGG
601: VKLASVGFIS SIGAVAASNT LYAVRKILNP ALIVNQQNKR SPIFKTAFVY GCFLGISANL RYQIIAGVVE HRFSDQFASQ PLLVNMLSFF ARTINSYWGT
701: QQWVDLARFT GLQTQKSEPP SYQTVDSSNH AALECSSAEE THIDEIKNQ

Best Arabidopsis Sequence Match ( AT2G40400.1 )
(BLAST)

001: MKPTTNGGLL ASQSSSSFSF PRFRGQLPII FSANNNQKKK NLPNPNVVTL CLHSHSNVSS SQIAVTRRAI LVAPPLLAAA ASLFLSISSA ASAETSAESV
101: ALPPVATAPP PPPVEKEEAI TSRIYDASVL GEPMAVGKDK KRVWEKLLNA RIVYLGEAEQ VPTRDDKVLE LEIVRNLRKR CIESDRQLSL ALEAFPLDLQ
201: EQLNQYMDKR MDGEVLKSYV SHWPVQRWQE YEPLLSYCRD NGVKLIACGT PLKVLRTVQA EGIRGLSESE RKLYTPPAGS GFISGFTSFS RSSSLNMNPL
301: TQIVPFGPSS YLSAQARVVE DHTMSQVIVQ AVADGGGTGM LVVVTGANHV EYGSRGTGLP ARISRKIPKK SQLVVLLDPE RQFLRKEGES PVADFLWYSA
401: ARPCSRNCFD RAEIARVMNA AGRRRDALPQ DIQKGLDLGL VSPEILQNFF DLEQYPLISE LTQRFQGFRE RLLADPKFLN RLAIEEAISI TTTLVAQYEK
501: RKENFFEELD YVITDSVRAS VVDFFTVWLP APTLSFISYA DETIGPNSID ALRGLLGSIP DNAFQKSLGG QEWTLSLRIA SVIIGGLKLA GVGVVSSFAA
601: VGSSNALYAI RKFIKPELGV GEQAKRSPML KTALVYGGYL GTSSNIRYQI IAGLIEHRIS DELSSQPLLV NMISFVVRVA NSYFGTQQWI DLARSTGLQT
701: QKSVTTSNQI PEVASQSTVE YSTTEEASMD DLKNQ

Arabidopsis Description

RER5Protein RETICULATA-RELATED 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SIY5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.