Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH23903 | Soybean | nucleus, plastid | 71.58 | 73.12 |
| KRH39906 | Soybean | mitochondrion, plastid | 71.32 | 72.07 |
| VIT_06s0004g02400.t01 | Wine grape | plastid | 67.63 | 66.93 |
| Solyc01g087750.2.1 | Tomato | nucleus, plastid | 63.95 | 63.95 |
| PGSC0003DMT400017452 | Potato | plastid | 63.42 | 63.42 |
| KRG88973 | Soybean | plastid | 60.79 | 58.78 |
| VIT_08s0007g01250.t01 | Wine grape | cytosol | 26.58 | 27.08 |
| VIT_08s0056g00560.t01 | Wine grape | plastid | 22.37 | 24.22 |
| VIT_06s0061g01160.t01 | Wine grape | plastid | 24.74 | 22.98 |
| VIT_12s0034g01330.t01 | Wine grape | cytosol | 8.95 | 16.27 |
| VIT_13s0067g02090.t01 | Wine grape | mitochondrion, plastid | 31.05 | 15.75 |
| VIT_12s0034g01370.t01 | Wine grape | plastid | 19.21 | 14.01 |
Protein Annotations
| ArrayExpress:VIT_13s0064g00160 | EMBL:FN595509 | EnsemblPlants:VIT_13s0064g00160.t01 | EnsemblPlantsGene:VIT_13s0064g00160 | EntrezGene:100255131 | EntrezGene:LOC100255131 |
| InterPro:RETICULATA-related | ncoils:Coil | PANTHER:PTHR31620 | PANTHER:PTHR31620:SF8 | PFAM:PF11891 | ProteinID:CCB49546 |
| ProteinID:CCB49546.1 | RefSeq:XP_002274472 | RefSeq:XP_002274472.1 | SEG:seg | unigene:Vvi.1579 | UniParc:UPI00015CA2EA |
| UniProt:F6HBE7 | wikigene:100255131 | wikigene:LOC100255131 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr13:-:21617253..21623770
Molecular Weight (calculated)
40588.3 Da
IEP (calculated)
9.685
GRAVY (calculated)
0.245
Length
380 amino acids
Sequence
(BLAST)
(BLAST)
001: MAIATFSNFS SRALSFPTPT PHLSPPILSV TTRRITAASV LTPPQRIFDS RRYRLPTVVL AVGDGGSGGV PGGGGGGGGG GGGGGEDGDA EERNRTEAIL
101: ALAEMGRSLD SLPKDLAAAV QAGRIPGAIV SRYFELEKSA VFRWLLQFGG FKERLLADDL FLAKVAMECG VGIFTKTAAE LERRREKFSK ELDFVFADVV
201: MAIIADFMLV WLPAPTVSLK PPLAVSAGAL AKFFYRCPDN AFQVALAGTS YSFLQRIGAI VRNGAKLFAV GTGASLVGTG ITNALINARK AFDKSFAAEA
301: EDVPIISTSV AYGVYMAVSS NLRYQVLAGV IEQRILEPLL HQHKLMLSAV CFAVRTGNTF LGSLMWVDYA RWIGIQKIRE
101: ALAEMGRSLD SLPKDLAAAV QAGRIPGAIV SRYFELEKSA VFRWLLQFGG FKERLLADDL FLAKVAMECG VGIFTKTAAE LERRREKFSK ELDFVFADVV
201: MAIIADFMLV WLPAPTVSLK PPLAVSAGAL AKFFYRCPDN AFQVALAGTS YSFLQRIGAI VRNGAKLFAV GTGASLVGTG ITNALINARK AFDKSFAAEA
301: EDVPIISTSV AYGVYMAVSS NLRYQVLAGV IEQRILEPLL HQHKLMLSAV CFAVRTGNTF LGSLMWVDYA RWIGIQKIRE
001: MAIASCFFCV PTPNTAISES NLTWPHIASF PRLSSSSSFN GVISAKSISF NRRVPITPVL SASSGNGGSD NNGGGLSGGG GGGDGGKNDG DGHGDEDRDR
101: NRNEAMLLLK ESGIELESLP KDLAAAIEAG RIPGSVITRF LELQKSAVMR WLMQFGGFRE RLLADDLFMA KLAMECGVGI FTKTAAEYER RRENFFNELE
201: VVFADVAMAI IADFMLVYLP APTVSLRPPL ALTAGGISKF FHNCPDNAFQ VALSGTSYTL LQRLGAITRN GAKLFAVGTT SSLVGTAITN AFIKARKAVD
301: QNSEGEVETV PIVSTSVAYG VYMAVSSNLR YQIVAGVIEQ RLLEPMLHQH KLALSALCFA VRTGNTFLGS LLWVDYARLI GIQKSH
101: NRNEAMLLLK ESGIELESLP KDLAAAIEAG RIPGSVITRF LELQKSAVMR WLMQFGGFRE RLLADDLFMA KLAMECGVGI FTKTAAEYER RRENFFNELE
201: VVFADVAMAI IADFMLVYLP APTVSLRPPL ALTAGGISKF FHNCPDNAFQ VALSGTSYTL LQRLGAITRN GAKLFAVGTT SSLVGTAITN AFIKARKAVD
301: QNSEGEVETV PIVSTSVAYG VYMAVSSNLR YQIVAGVIEQ RLLEPMLHQH KLALSALCFA VRTGNTFLGS LLWVDYARLI GIQKSH
Arabidopsis Description
RER4Protein RETICULATA-RELATED 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94CJ5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.