Factsheet for VIT_12s0034g01370.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0034g01330.t01	Wine grape	cytosol	39.54	98.56
GSMUA_Achr2P05940_001	Banana	cytosol, extracellular, plasma membrane	64.49	76.71
KRH44019	Soybean	mitochondrion, nucleus, plastid	72.17	72.45
KRH10440	Soybean	endoplasmic reticulum, nucleus, plastid	72.17	71.89
Solyc10g045620.1.1	Tomato	cytosol	46.64	71.68
AT5G24690.1	Thale cress	plastid	70.63	70.63
Solyc01g104270.2.1	Tomato	plastid	70.63	70.23
PGSC0003DMT400061143	Potato	plastid	70.44	70.04
CDX80466	Canola	plastid	70.83	70.02
Bra036522.1-P	Field mustard	plastid	69.87	70.0
Bra009789.1-P	Field mustard	plastid	70.83	69.75
CDX87117	Canola	plastid	70.25	69.58
Os12t0283800-01	Rice	extracellular, plastid	30.13	66.53
Zm00001d041036_P001	Maize	cytosol	42.99	65.12
Solyc10g045630.1.1	Tomato	plastid	32.25	64.12
HORVU7Hr1G082560.2	Barley	mitochondrion	49.14	61.1
TraesCS5A01G110400.1	Wheat	plastid	58.35	57.04
TraesCS5B01G110100.1	Wheat	golgi	58.16	56.95
EES16982	Sorghum	plastid	58.54	56.69
TraesCS5D01G123000.1	Wheat	plastid	57.97	56.55
Zm00001d023791_P002	Maize	plasma membrane	57.58	55.87
TraesCS7A01G335500.1	Wheat	plastid	52.4	55.15
TraesCS7B01G247100.1	Wheat	plastid	52.02	54.42
TraesCS7D01G343200.1	Wheat	plastid	52.02	54.42
HORVU5Hr1G030040.1	Barley	plastid	57.2	54.38
CDX88129	Canola	cytosol	70.83	21.33
VIT_08s0007g01250.t01	Wine grape	cytosol	14.4	20.11
VIT_06s0004g02400.t01	Wine grape	plastid	14.59	19.79
VIT_08s0056g00560.t01	Wine grape	plastid	13.24	19.66
VIT_13s0064g00160.t01	Wine grape	plastid	14.01	19.21
Os05t0474600-02	Rice	cytosol	14.59	17.51
VIT_06s0061g01160.t01	Wine grape	plastid	13.05	16.63
VIT_13s0067g02090.t01	Wine grape	mitochondrion, plastid	19.96	13.89
Os05t0474500-01	Rice	cytosol	0.19	0.2

Protein Annotations

ArrayExpress:VIT_12s0034g01370	EMBL:FN595497	EnsemblPlants:VIT_12s0034g01370.t01	EnsemblPlantsGene:VIT_12s0034g01370	EntrezGene:100246257	EntrezGene:LOC100246257
InterPro:RETICULATA-related	PANTHER:PTHR31038	PANTHER:PTHR31038:SF2	PFAM:PF11891	ProteinID:CCB48713	ProteinID:CCB48713.1
RefSeq:XP_002273537	RefSeq:XP_002273537.1	SEG:seg	TIGR:TC57843	TIGR:TC61087	unigene:Vvi.9445
UniParc:UPI0002109AD3	UniProt:F6H966	wikigene:100246257	wikigene:LOC100246257	MapMan:35.1	:

Description

No Description!

Coordinates

chr12:-:17353333..17373768

Molecular Weight (calculated)

56737.1 Da

IEP (calculated)

9.583

GRAVY (calculated)

-0.122

Length

521 amino acids

Sequence
(BLAST)

001: MPVAPTKTIY SSNPLLPIHT LSSLRPAAAS ASAFAKRRSL AVRASSSALV DGDSVALLER CFLADSASVP SSSASAMPLP VMKGKYGSFG AVTLEKSKLD
101: LSQKQSRLSP ETAIGGGGGD IGKRINNGGG DGGDDDGDDD DYFDDFDDGD EGDEGGLFRR RLVLEELFDR KFVDAVLNEW QKTMMDLPAG LRQAYEMGLV
201: SSAQMVKFLA INARPTTARF ISRTLPQGMS RAFIGRMIAD PAFAYRLLLE QVTTIGCSVW WELKNRKERI KQEWDLALIN VLTVSACNAI VVWSLAPCRS
301: YGNTFRFDLQ NTLQKLPNNI FEKSYPLREF DLQKRIHSFF YKAAEFCMVG LTAGAAQGAL TNFAASKKKD RLSVTIPTVS TNALGYGAFL GLYANLRYQL
401: LCGVDRVMIN HFDVIGVALF FSTALRILNV QLGETSRLAW LGVEADPLAQ SDNLLKAYNR PSEGAAESSS KWFISKKAIV SGLGLLGIKQ GTGDSVANQE
501: SSPPKARRKR VIRKKVTTTS A

Best Arabidopsis Sequence Match ( AT5G24690.1 )
(BLAST)

001: MSHMVFQSVV APKPLSPLKP CLPIPRPLVT LPCKLRRGFV RASSSSFLVD DSVSGLERCL QLPSGVELGT SSSGSFSAST QMCPVMKGKF GSVGAVTLEK
101: GKLDMTQKIS ETSPEIATGG GGGNIGKSIN NGGGDGGDDN GDDDDYFDEF DDGDEGDDDG LFRRRMFLAE IFDRKFVDAV LNEWQKTMMD LPAGLRQAYE
201: MGLVSSAQMV KFLAINARPT TTRMISRALP QGLSRAFVGR MLADPAFLYK LLLEQAATVG CSVWWEVKNR KNRLKEEWDL ALINVLTVSA CNAAAVWLLA
301: PCRSYGNTFR FDLQNTLQKL PNNLFEMSYP LREFDLQKRF HSLFYKAAEL SILGLAAGTL QGSLSNVLAG KKKNRVSVTV PSISTNALGY GAFLGIYANL
401: RYQLLCGFER GVSSHFDVIG VALFFGTALR IMNVQLGEKS RQVWLGVEAD PLAQSDDLLA KAYNRPSEEA VAKPSSKWFI SKNAIVSGLL GKKQEDSVSD
501: SPPPKARRKR IVRKKVAASA S

Arabidopsis Description

AT5g24690/MXC17_8 [Source:UniProtKB/TrEMBL;Acc:Q93W02]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.