Factsheet for Bra036522.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87117	Canola	plastid	96.54	95.44
Bra009789.1-P	Field mustard	plastid	89.81	88.28
AT5G24690.1	Thale cress	plastid	85.38	85.22
VIT_12s0034g01330.t01	Wine grape	cytosol	28.46	70.81
GSMUA_Achr2P05940_001	Banana	cytosol, extracellular, plasma membrane	59.04	70.09
VIT_12s0034g01370.t01	Wine grape	plastid	70.0	69.87
KRH44019	Soybean	mitochondrion, nucleus, plastid	66.54	66.67
Solyc01g104270.2.1	Tomato	plastid	66.15	65.65
PGSC0003DMT400061143	Potato	plastid	66.15	65.65
KRH10440	Soybean	endoplasmic reticulum, nucleus, plastid	65.77	65.39
Solyc10g045620.1.1	Tomato	cytosol	41.73	64.01
Os12t0283800-01	Rice	extracellular, plastid	28.46	62.71
Zm00001d041036_P001	Maize	cytosol	40.38	61.05
Solyc10g045630.1.1	Tomato	plastid	30.58	60.69
HORVU7Hr1G082560.2	Barley	mitochondrion	48.46	60.14
EES16982	Sorghum	plastid	56.35	54.46
TraesCS5B01G110100.1	Wheat	golgi	55.38	54.14
TraesCS5A01G110400.1	Wheat	plastid	55.38	54.03
TraesCS7D01G343200.1	Wheat	plastid	51.35	53.61
TraesCS5D01G123000.1	Wheat	plastid	55.0	53.56
TraesCS7A01G335500.1	Wheat	plastid	50.96	53.54
TraesCS7B01G247100.1	Wheat	plastid	51.15	53.41
Zm00001d023791_P002	Maize	plasma membrane	55.0	53.26
HORVU5Hr1G030040.1	Barley	plastid	54.81	52.01
Bra029704.1-P	Field mustard	plastid	13.85	22.43
Bra008880.1-P	Field mustard	cytosol	11.73	21.71
Bra040052.1-P	Field mustard	golgi, plasma membrane, plastid	10.19	21.54
Bra002429.1-P	Field mustard	plastid	16.54	20.48
Bra006164.1-P	Field mustard	plastid	14.81	20.37
Bra000024.1-P	Field mustard	plastid	16.15	19.72
Bra005154.1-P	Field mustard	plastid	15.96	19.62
Os05t0474600-02	Rice	cytosol	15.38	18.43
Bra006636.1-P	Field mustard	plastid	16.54	14.65
Bra003229.1-P	Field mustard	plastid	19.81	13.9
Bra017008.1-P	Field mustard	plastid	19.42	13.59
Os05t0474500-01	Rice	cytosol	0.19	0.2

Protein Annotations

EnsemblPlants:Bra036522.1	EnsemblPlants:Bra036522.1-P	EnsemblPlantsGene:Bra036522	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:RETICULATA-related	PANTHER:PTHR31038	PANTHER:PTHR31038:SF2	PFAM:PF11891	SEG:seg	TMHMM:TMhelix
UniParc:UPI0002541C75	UniProt:M4F613	MapMan:35.1	:	:	:

Description

AT5G24690 (E=8e-203) | INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, chloroplast, plastid, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: RER1 (RETICULATA-RELATED 1) (TAIR:AT5G22790.1); Has 251 Blast hits to 242 proteins in 37 species: Archae - 0; Bacteria - 8; Metazoa - 20; Fungi - 4; Plants - 172; Viruses - 3; Other Eukaryotes - 44 (source: NCBI BLink).

Coordinates

chrA09:-:1561927..1564467

Molecular Weight (calculated)

56920.1 Da

IEP (calculated)

9.620

GRAVY (calculated)

-0.195

Length

520 amino acids

Sequence
(BLAST)

001: MSHMVFQSAA APKPCLPIPR STAALPCNLR RVSFVRASSS SLIDSVGDSV SRLERCFQLP FSGDSSTSSY SISSSPSAQM CPVMKGGKFG SVGAVTLEKG
101: KLDTTQKKVE SSPEIATGGG GGDIGKKINF GGGDGGDDDG DDDDYFDEFD DDDDGDEGGL FRRRMFLAEI FDRKFVDAVL NEWQKTMLDL PAGLRQAYEM
201: GLVSSAQMVK FLAINARPTT TRLISRALPQ GLSRAFVGRM LADPSFLYRL LLEQAATVGC SVWWEVKTRK NRIKEEWDLA LINVLTVSAC NAAAVWLLAP
301: SRSYGNTFRF DLQNTLQKLP NNIFETSYPL REFNLQKRIH SLFYKAAELS ILGVATGAFQ GSLSNFLAGK KKNRVSVTVP SVTTNALGYG AFLGLYANLR
401: YQLLCGFERT MSSHFDVIGV ALFFGTAVRI MNVQLGERSR QIWLGVEADP LAQSDGLLAK AYNRPSSEEG VAKPDSRWFI SKNAIVSRLL GMKQHDSASD
501: SPQPPKARRK RIVRKKVAAS

Best Arabidopsis Sequence Match ( AT5G24690.1 )
(BLAST)

001: MSHMVFQSVV APKPLSPLKP CLPIPRPLVT LPCKLRRGFV RASSSSFLVD DSVSGLERCL QLPSGVELGT SSSGSFSAST QMCPVMKGKF GSVGAVTLEK
101: GKLDMTQKIS ETSPEIATGG GGGNIGKSIN NGGGDGGDDN GDDDDYFDEF DDGDEGDDDG LFRRRMFLAE IFDRKFVDAV LNEWQKTMMD LPAGLRQAYE
201: MGLVSSAQMV KFLAINARPT TTRMISRALP QGLSRAFVGR MLADPAFLYK LLLEQAATVG CSVWWEVKNR KNRLKEEWDL ALINVLTVSA CNAAAVWLLA
301: PCRSYGNTFR FDLQNTLQKL PNNLFEMSYP LREFDLQKRF HSLFYKAAEL SILGLAAGTL QGSLSNVLAG KKKNRVSVTV PSISTNALGY GAFLGIYANL
401: RYQLLCGFER GVSSHFDVIG VALFFGTALR IMNVQLGEKS RQVWLGVEAD PLAQSDDLLA KAYNRPSEEA VAKPSSKWFI SKNAIVSGLL GKKQEDSVSD
501: SPPPKARRKR IVRKKVAASA S

Arabidopsis Description

AT5g24690/MXC17_8 [Source:UniProtKB/TrEMBL;Acc:Q93W02]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.