Factsheet for Os12t0283800-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular

Predictor Summary:

plastid 1
extracellular 5
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plastid
Any Predictor:	peroxisome, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	peroxisome
PProwler:	secretory
TargetP:	secretory
YLoc:	extracellular

plastid: 21433289

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0034g01330.t01	Wine grape	cytosol	57.63	65.07
Zm00001d041036_P001	Maize	cytosol	66.1	45.35
Solyc10g045620.1.1	Tomato	cytosol	64.83	45.13
EES16982	Sorghum	plastid	92.37	40.52
Zm00001d023791_P002	Maize	plasma membrane	88.98	39.11
TraesCS5B01G110100.1	Wheat	golgi	88.14	39.1
TraesCS5A01G110400.1	Wheat	plastid	88.14	39.02
TraesCS5D01G123000.1	Wheat	plastid	87.71	38.76
HORVU5Hr1G030040.1	Barley	plastid	86.86	37.41
GSMUA_Achr2P05940_001	Banana	cytosol, extracellular, plasma membrane	66.53	35.84
VIT_12s0034g01370.t01	Wine grape	plastid	66.53	30.13
KRH44019	Soybean	mitochondrion, nucleus, plastid	64.41	29.29
PGSC0003DMT400061143	Potato	plastid	64.83	29.2
Solyc01g104270.2.1	Tomato	plastid	64.83	29.2
KRH10440	Soybean	endoplasmic reticulum, nucleus, plastid	63.56	28.68
CDX80466	Canola	plastid	63.98	28.65
Bra036522.1-P	Field mustard	plastid	62.71	28.46
AT5G24690.1	Thale cress	plastid	62.71	28.41
Bra009789.1-P	Field mustard	plastid	63.56	28.36
CDX87117	Canola	plastid	63.14	28.33
Os05t0388600-01	Rice	plasma membrane	18.22	11.38
Os01t0957200-01	Rice	plastid	18.22	11.05
Os04t0524400-01	Rice	plastid	18.22	10.78
Os01t0812900-01	Rice	plastid	15.68	10.63
Os05t0474600-02	Rice	cytosol	18.64	10.14
Os07t0240300-01	Rice	plastid	17.8	9.48
CDX88129	Canola	cytosol	63.56	8.67
Os01t0826900-01	Rice	cytosol, endoplasmic reticulum, plastid	16.53	5.22
Solyc10g045630.1.1	Tomato	plastid	1.27	1.15
Os05t0474500-01	Rice	cytosol	0.42	0.2
Os03t0390900-01	Rice	plastid	0.0	0.0

Protein Annotations

EnsemblPlants:Os12t0283800-01	EnsemblPlantsGene:Os12g0283800	InterPro:RETICULATA-related	PANTHER:PTHR31038	PANTHER:PTHR31038:SF2	PFAM:PF11891
ProteinID:BAF29599.1	ProteinID:BAT16727.1	SEG:seg	UniParc:UPI0000DD9E56	UniProt:Q0INW6	MapMan:35.2

Description

Protein of unknown function DUF3411 domain containing protein. (Os12t0283800-01);Similar to predicted protein. (Os12t0283800-02)

Coordinates

chr12:-:10756637..10759160

Molecular Weight (calculated)

26098.7 Da

IEP (calculated)

10.506

GRAVY (calculated)

-0.050

Length

236 amino acids

Sequence
(BLAST)

001: VVNALTASCC NVMVLGLLAP CRSYGSTSRF DFQNAIEKLP NNIFEKSYPL RQFDLQKRIS AFFYKAAELS LLGVVAGSIQ GGLSKALSAR KERRLSVTIP
101: SVSTNALGYG AFLGLYANLR YQLLCGLDQY MVRRFDVLGV AIFFSTALRL TNIQIGESSR RTWLGEEADP QYSDRLLRAY KRPVEVAGDQ QDSRWFISKD
201: AIVSGLGLLG IKQGGTEAAL SKPRRKRVVR KKVAST

Best Arabidopsis Sequence Match ( AT5G24690.1 )
(BLAST)

001: MSHMVFQSVV APKPLSPLKP CLPIPRPLVT LPCKLRRGFV RASSSSFLVD DSVSGLERCL QLPSGVELGT SSSGSFSAST QMCPVMKGKF GSVGAVTLEK
101: GKLDMTQKIS ETSPEIATGG GGGNIGKSIN NGGGDGGDDN GDDDDYFDEF DDGDEGDDDG LFRRRMFLAE IFDRKFVDAV LNEWQKTMMD LPAGLRQAYE
201: MGLVSSAQMV KFLAINARPT TTRMISRALP QGLSRAFVGR MLADPAFLYK LLLEQAATVG CSVWWEVKNR KNRLKEEWDL ALINVLTVSA CNAAAVWLLA
301: PCRSYGNTFR FDLQNTLQKL PNNLFEMSYP LREFDLQKRF HSLFYKAAEL SILGLAAGTL QGSLSNVLAG KKKNRVSVTV PSISTNALGY GAFLGIYANL
401: RYQLLCGFER GVSSHFDVIG VALFFGTALR IMNVQLGEKS RQVWLGVEAD PLAQSDDLLA KAYNRPSEEA VAKPSSKWFI SKNAIVSGLL GKKQEDSVSD
501: SPPPKARRKR IVRKKVAASA S

Arabidopsis Description

AT5g24690/MXC17_8 [Source:UniProtKB/TrEMBL;Acc:Q93W02]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.