Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G110400.1 | Wheat | plastid | 98.88 | 99.06 |
| TraesCS5B01G110100.1 | Wheat | golgi | 98.31 | 98.68 |
| HORVU5Hr1G030040.1 | Barley | plastid | 95.88 | 93.43 |
| Os12t0283800-01 | Rice | extracellular, plastid | 38.76 | 87.71 |
| Zm00001d041036_P001 | Maize | cytosol | 55.43 | 86.05 |
| EES16982 | Sorghum | plastid | 83.9 | 83.27 |
| Zm00001d023791_P002 | Maize | plasma membrane | 80.15 | 79.7 |
| GSMUA_Achr2P05940_001 | Banana | cytosol, extracellular, plasma membrane | 53.75 | 65.53 |
| VIT_12s0034g01330.t01 | Wine grape | cytosol | 24.53 | 62.68 |
| TraesCS7D01G343200.1 | Wheat | plastid | 57.68 | 61.85 |
| VIT_12s0034g01370.t01 | Wine grape | plastid | 56.55 | 57.97 |
| KRH10440 | Soybean | endoplasmic reticulum, nucleus, plastid | 56.37 | 57.55 |
| KRH44019 | Soybean | mitochondrion, nucleus, plastid | 55.62 | 57.23 |
| Solyc10g045620.1.1 | Tomato | cytosol | 35.39 | 55.75 |
| CDX80466 | Canola | plastid | 54.87 | 55.6 |
| AT5G24690.1 | Thale cress | plastid | 53.93 | 55.28 |
| Bra009789.1-P | Field mustard | plastid | 54.68 | 55.2 |
| Bra036522.1-P | Field mustard | plastid | 53.56 | 55.0 |
| Solyc01g104270.2.1 | Tomato | plastid | 53.93 | 54.96 |
| PGSC0003DMT400061143 | Potato | plastid | 53.93 | 54.96 |
| CDX87117 | Canola | plastid | 53.75 | 54.56 |
| Solyc10g045630.1.1 | Tomato | plastid | 24.16 | 49.24 |
| TraesCS2D01G374200.1 | Wheat | plastid | 16.67 | 22.65 |
| TraesCS3D01G330200.1 | Wheat | plastid | 13.86 | 20.85 |
| TraesCS1D01G242600.1 | Wheat | golgi | 14.61 | 20.31 |
| TraesCS2D01G241700.1 | Wheat | golgi, unclear | 15.54 | 19.39 |
| CDX88129 | Canola | cytosol | 54.31 | 16.76 |
| TraesCS3D01G341400.1 | Wheat | plastid | 20.79 | 15.42 |
| TraesCS1D01G293100.1 | Wheat | plastid | 20.41 | 14.79 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G123000.1 | EnsemblPlantsGene:TraesCS5D01G123000 | InterPro:RETICULATA-related | PANTHER:PTHR31038 | PANTHER:PTHR31038:SF2 | PFAM:PF11891 |
| SEG:seg | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr5D:-:179763127..179778497
Molecular Weight (calculated)
58124.7 Da
IEP (calculated)
9.727
GRAVY (calculated)
-0.235
Length
534 amino acids
Sequence
(BLAST)
(BLAST)
001: MASLAAFHPN LPHAHGHPSH PNPTSGLLRL LPSCRRHRAP RRRGLGLAVS ACASSAASPS AAGRGDRSEA ASSLERCLAA SALSAAAPAA APPRVPPAMK
101: GGKQYGAFGA VTLEKAKLDL SQRKKKIMPE LATGGGGGDI GKRIGHGGGD GGDDDGDDDD YFDDSDDGEE EDGGLFRRRI VIQELFNREF IDAVMQEWCK
201: TMISLPAGLR QAYEMGLVSS AQMVRFLSVF SRPTHTRSFS RALPGWLSRG LVGRTLADPS FPHKMAFEFL ATFASSVWWE MNIRKERFEQ EWDLAVVNAL
301: TASCCNLVVL GLLAPCRSYG STSRFDFQNA IEKLPNNIFE KSYPLREFDL QKRISAFLYK AAELSLVGVV AGSIQGGMSK ALSARKDGRL SVTLPNVSAN
401: ALGYGAFLGL YANLRYQLLC GLDQYMIKRF DVLGMSIFIG TTLRFMNIQI GESSRRAWLG EEADPQYSDR LLRAYTRPVE VTTAADQQEE SRWFISKDAV
501: VSGLGLLGIK QGGPEAQLSK PRRKRVIRKK VASG
101: GGKQYGAFGA VTLEKAKLDL SQRKKKIMPE LATGGGGGDI GKRIGHGGGD GGDDDGDDDD YFDDSDDGEE EDGGLFRRRI VIQELFNREF IDAVMQEWCK
201: TMISLPAGLR QAYEMGLVSS AQMVRFLSVF SRPTHTRSFS RALPGWLSRG LVGRTLADPS FPHKMAFEFL ATFASSVWWE MNIRKERFEQ EWDLAVVNAL
301: TASCCNLVVL GLLAPCRSYG STSRFDFQNA IEKLPNNIFE KSYPLREFDL QKRISAFLYK AAELSLVGVV AGSIQGGMSK ALSARKDGRL SVTLPNVSAN
401: ALGYGAFLGL YANLRYQLLC GLDQYMIKRF DVLGMSIFIG TTLRFMNIQI GESSRRAWLG EEADPQYSDR LLRAYTRPVE VTTAADQQEE SRWFISKDAV
501: VSGLGLLGIK QGGPEAQLSK PRRKRVIRKK VASG
001: MSHMVFQSVV APKPLSPLKP CLPIPRPLVT LPCKLRRGFV RASSSSFLVD DSVSGLERCL QLPSGVELGT SSSGSFSAST QMCPVMKGKF GSVGAVTLEK
101: GKLDMTQKIS ETSPEIATGG GGGNIGKSIN NGGGDGGDDN GDDDDYFDEF DDGDEGDDDG LFRRRMFLAE IFDRKFVDAV LNEWQKTMMD LPAGLRQAYE
201: MGLVSSAQMV KFLAINARPT TTRMISRALP QGLSRAFVGR MLADPAFLYK LLLEQAATVG CSVWWEVKNR KNRLKEEWDL ALINVLTVSA CNAAAVWLLA
301: PCRSYGNTFR FDLQNTLQKL PNNLFEMSYP LREFDLQKRF HSLFYKAAEL SILGLAAGTL QGSLSNVLAG KKKNRVSVTV PSISTNALGY GAFLGIYANL
401: RYQLLCGFER GVSSHFDVIG VALFFGTALR IMNVQLGEKS RQVWLGVEAD PLAQSDDLLA KAYNRPSEEA VAKPSSKWFI SKNAIVSGLL GKKQEDSVSD
501: SPPPKARRKR IVRKKVAASA S
101: GKLDMTQKIS ETSPEIATGG GGGNIGKSIN NGGGDGGDDN GDDDDYFDEF DDGDEGDDDG LFRRRMFLAE IFDRKFVDAV LNEWQKTMMD LPAGLRQAYE
201: MGLVSSAQMV KFLAINARPT TTRMISRALP QGLSRAFVGR MLADPAFLYK LLLEQAATVG CSVWWEVKNR KNRLKEEWDL ALINVLTVSA CNAAAVWLLA
301: PCRSYGNTFR FDLQNTLQKL PNNLFEMSYP LREFDLQKRF HSLFYKAAEL SILGLAAGTL QGSLSNVLAG KKKNRVSVTV PSISTNALGY GAFLGIYANL
401: RYQLLCGFER GVSSHFDVIG VALFFGTALR IMNVQLGEKS RQVWLGVEAD PLAQSDDLLA KAYNRPSEEA VAKPSSKWFI SKNAIVSGLL GKKQEDSVSD
501: SPPPKARRKR IVRKKVAASA S
Arabidopsis Description
AT5g24690/MXC17_8 [Source:UniProtKB/TrEMBL;Acc:Q93W02]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.