Factsheet for TraesCS2D01G241700.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear

Predictor Summary:

plastid 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G234300.1	Wheat	mitochondrion, plastid	98.83	99.3
TraesCS2B01G261500.1	Wheat	golgi, unclear	97.9	97.9
HORVU2Hr1G049760.6	Barley	cytosol, peroxisome	78.04	93.82
Os07t0240300-01	Rice	plastid	80.61	77.88
EER98239	Sorghum	plastid	78.74	77.29
Zm00001d019249_P002	Maize	mitochondrion, plastid	78.27	75.45
VIT_08s0007g01250.t01	Wine grape	cytosol	53.97	61.93
CDX74930	Canola	plastid	55.61	56.26
CDY59488	Canola	plastid	54.91	56.09
CDX91387	Canola	plastid	55.37	55.9
Bra000024.1-P	Field mustard	plastid	55.37	55.63
CDY07766	Canola	plastid	53.74	55.56
Bra005154.1-P	Field mustard	plastid	54.91	55.56
TraesCS2D01G374200.1	Wheat	plastid	50.93	55.47
KRH49190	Soybean	endoplasmic reticulum	57.24	55.3
KRH00055	Soybean	plastid	57.48	55.28
AT2G37860.4	Thale cress	plastid	54.91	54.4
TraesCS1D01G242600.1	Wheat	golgi	21.73	24.22
TraesCS3D01G330200.1	Wheat	plastid	19.39	23.38
TraesCS7D01G343200.1	Wheat	plastid	18.69	16.06
TraesCS5D01G123000.1	Wheat	plastid	19.39	15.54
TraesCS3D01G341400.1	Wheat	plastid	20.56	12.22
TraesCS1D01G293100.1	Wheat	plastid	20.79	12.08

Protein Annotations

MapMan:35.1	GO:GO:0000302	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009628
GO:GO:0009648	GO:GO:0009941	GO:GO:0016020	GO:GO:0048366	PFAM:PF11891	PANTHER:PTHR31038
PANTHER:PTHR31038:SF5	InterPro:RETICULATA-related	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS2D01G241700	EnsemblPlants:TraesCS2D01G241700.1	SEG:seg

Description

No Description!

Coordinates

chr2D:+:263489451..263513049

Molecular Weight (calculated)

44740.8 Da

IEP (calculated)

8.616

GRAVY (calculated)

0.084

Length

428 amino acids

Sequence
(BLAST)

001: MSMAFSCASV RLHGRVGTVK CRAVLARPSG CSYPTGRRRI ARGIRCQLPP QASADGSAAT TSGAAVVARE AGKVAGSAED VGAVTQPTAL QEKGAEVADV
101: SGSGGNAKFR PGGGGGGGGD SGGGGDGGDG HNEGDDEFGP ILSFEQVVQE VEKQGVSLSS LPADMIEAAK SIGIQKLLLL RYLDMQASAW PLGPAIRSCG
201: LLRNRMLVDP VFLFKIGTEI VIDTCCATFA EVQKRGDEFW SEFELYAADM LVGVVVNVAL VGMLAPYARF RGGSASAGIL GRVRHAYDAL PSSVFEAERP
301: GYSFSIQQRL GSYLLKGLLY GAVGFSCGLV GQGIANLIMT AKRSVKKSEN DVPVPPLLKT SALWGVFLGV SSNTRYQVIN GLERLVEASP LGKRVPAASL
401: AFTVSVRFAN NVYGGMQFVD WARMSGCQ

Best Arabidopsis Sequence Match ( AT2G37860.3 )
(BLAST)

001: MAGCAMNLQF SSVVKVRNEI SSFGICNRDF VFRDLAKAMK VPVLRIRGGS GRQRSRLFVV NMSQSPIEPQ SGGFAATEQI KGEGDNSILG KDNVRNLGTD
101: QLENLDIDGN VGDGFNGSDG NGGGGGGGNG GEGDGEGEDY EEKEFGPILK FEEVMKETEA RGATLPSDML EAAKNYGIRK VLLLRYLDLQ SSAGLLGFAI
201: RSWAMLRNRM LADPSFLFKI GAEIVIDSCC ATVAEVQKRG KDFWAEFELY VADLLVGTVV NIALVGMLAP YVRFGQPSAS PGFLGRMVFA YNALPSSVFE
301: AERPGCRFSA QQRLATYFYK GIMYGAVGFG CGIVGQGIAN LIMTAKRNIN KSEENIPVPP LIKSAALWGV FLSVSSNTRY QIINGLERVV EASPFAKKFP
401: PAAMAFTVGV RLANNIYGGM QFVDWARLSG CQ

Arabidopsis Description

REProtein RETICULATA, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:B9DFK5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.