Factsheet for VIT_08s0007g01250.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0061g01160.t01	Wine grape	plastid	72.65	66.26
CDY07766	Canola	plastid	69.71	62.8
HORVU2Hr1G049760.6	Barley	cytosol, peroxisome	59.52	62.36
CDY59488	Canola	plastid	69.71	62.05
CDX74930	Canola	plastid	69.97	61.7
CDX91387	Canola	plastid	69.97	61.56
Bra005154.1-P	Field mustard	plastid	69.71	61.47
Bra000024.1-P	Field mustard	plastid	69.97	61.27
AT2G37860.4	Thale cress	plastid	70.24	60.65
EER98239	Sorghum	plastid	66.49	56.88
Os07t0240300-01	Rice	plastid	65.68	55.3
Zm00001d019249_P002	Maize	mitochondrion, plastid	65.68	55.18
TraesCS2A01G234300.1	Wheat	mitochondrion, plastid	62.2	54.46
TraesCS2B01G261500.1	Wheat	golgi, unclear	62.2	54.21
TraesCS2D01G241700.1	Wheat	golgi, unclear	61.93	53.97
KRH33749	Soybean	plastid	24.66	32.28
VIT_13s0064g00160.t01	Wine grape	plastid	27.08	26.58
VIT_06s0004g02400.t01	Wine grape	plastid	25.47	24.74
VIT_08s0056g00560.t01	Wine grape	plastid	22.52	23.93
VIT_12s0034g01330.t01	Wine grape	cytosol	8.58	15.31
VIT_12s0034g01370.t01	Wine grape	plastid	20.11	14.4
VIT_13s0067g02090.t01	Wine grape	mitochondrion, plastid	23.06	11.48

Protein Annotations

EntrezGene:100264910	wikigene:100264910	MapMan:35.1	ProteinID:CCB55544	ProteinID:CCB55544.1	UniProt:F6HL27
EMBL:FN595991	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	EntrezGene:LOC100264910	wikigene:LOC100264910
PFAM:PF11891	PANTHER:PTHR31038	PANTHER:PTHR31038:SF9	InterPro:RETICULATA-related	TMHMM:TMhelix	UniParc:UPI00021090FF
ArrayExpress:VIT_08s0007g01250	EnsemblPlantsGene:VIT_08s0007g01250	EnsemblPlants:VIT_08s0007g01250.t01	unigene:Vvi.20739	RefSeq:XP_002272506	RefSeq:XP_002272506.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr8:+:15350277..15358049

Molecular Weight (calculated)

40085.2 Da

IEP (calculated)

4.905

GRAVY (calculated)

0.003

Length

373 amino acids

Sequence
(BLAST)

001: MLEPQAELQS GVAETPVSKD VTDTSVRNDA RVLETGCALK TDSEDGGEDM LDGNGGNGNF PNGRGGGGGG GGDDKDDGDD LEEEEFGPIL SFEEVMREAQ
101: ARGASLPSDM LTAAKSVGIR KILLLRYLDL QGSVWPLGFA MKSCSMLRNR MLADPSFLFK IGTEIVIDSC CATFAEVQKR GKDFWAEFEL YTADLLVGVV
201: VNIALVGMLA PYARIGQPSI SKGFLGHLQH AYGALPSSVF EAERPGCRFS VKQRIATYFF KGILYGSVGF ACGLIGQGIA NLIMTAKRSI KKSEEDIPVP
301: PLVKSAALWG VFLAVSSNTR YQIINGLERV VEASPLAKKV PPVAMAFTVG VRFANNIYGG MQFVDWARWS GVQ

Best Arabidopsis Sequence Match ( AT2G37860.3 )
(BLAST)

001: MAGCAMNLQF SSVVKVRNEI SSFGICNRDF VFRDLAKAMK VPVLRIRGGS GRQRSRLFVV NMSQSPIEPQ SGGFAATEQI KGEGDNSILG KDNVRNLGTD
101: QLENLDIDGN VGDGFNGSDG NGGGGGGGNG GEGDGEGEDY EEKEFGPILK FEEVMKETEA RGATLPSDML EAAKNYGIRK VLLLRYLDLQ SSAGLLGFAI
201: RSWAMLRNRM LADPSFLFKI GAEIVIDSCC ATVAEVQKRG KDFWAEFELY VADLLVGTVV NIALVGMLAP YVRFGQPSAS PGFLGRMVFA YNALPSSVFE
301: AERPGCRFSA QQRLATYFYK GIMYGAVGFG CGIVGQGIAN LIMTAKRNIN KSEENIPVPP LIKSAALWGV FLSVSSNTRY QIINGLERVV EASPFAKKFP
401: PAAMAFTVGV RLANNIYGGM QFVDWARLSG CQ

Arabidopsis Description

REProtein RETICULATA, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:B9DFK5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.