Factsheet for Bra000024.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
plastid 5
mitochondrion 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07766	Canola	plastid	93.9	96.62
CDY59488	Canola	plastid	93.43	94.99
Bra005154.1-P	Field mustard	plastid	84.98	85.58
AT2G37860.4	Thale cress	plastid	84.27	83.1
VIT_08s0007g01250.t01	Wine grape	cytosol	61.27	69.97
HORVU2Hr1G049760.6	Barley	cytosol, peroxisome	53.29	63.76
KRH49190	Soybean	endoplasmic reticulum	64.55	62.08
KRH00055	Soybean	plastid	64.08	61.35
Bra002429.1-P	Field mustard	plastid	57.04	57.86
TraesCS2B01G261500.1	Wheat	golgi, unclear	55.87	55.61
TraesCS2A01G234300.1	Wheat	mitochondrion, plastid	55.4	55.4
TraesCS2D01G241700.1	Wheat	golgi, unclear	55.63	55.37
EER98239	Sorghum	plastid	56.57	55.28
Os07t0240300-01	Rice	plastid	56.81	54.63
Zm00001d019249_P002	Maize	mitochondrion, plastid	56.1	53.83
Bra006636.1-P	Field mustard	plastid	53.05	38.5
Bra008880.1-P	Field mustard	cytosol	19.25	29.18
Bra040052.1-P	Field mustard	golgi, plasma membrane, plastid	15.49	26.83
Bra006164.1-P	Field mustard	plastid	23.71	26.72
Bra029704.1-P	Field mustard	plastid	18.78	24.92
Bra036522.1-P	Field mustard	plastid	19.72	16.15
Bra009789.1-P	Field mustard	plastid	19.72	15.88
Bra017008.1-P	Field mustard	plastid	22.07	12.65
Bra003229.1-P	Field mustard	plastid	21.6	12.42

Protein Annotations

MapMan:35.1	EnsemblPlantsGene:Bra000024	EnsemblPlants:Bra000024.1	EnsemblPlants:Bra000024.1-P	GO:GO:0000302	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150
GO:GO:0009507	GO:GO:0009536	GO:GO:0009628	GO:GO:0009648	GO:GO:0009941	GO:GO:0016020
GO:GO:0016021	GO:GO:0048366	UniProt:M4C746	PFAM:PF11891	PANTHER:PTHR31038	PANTHER:PTHR31038:SF5
InterPro:RETICULATA-related	TMHMM:TMhelix	UniParc:UPI0002540015	SEG:seg	:	:

Description

AT2G37860 (E=2e-167) LCD1 | LCD1 (LOWER CELL DENSITY 1)

Coordinates

chrA03:+:8892612..8894401

Molecular Weight (calculated)

46222.5 Da

IEP (calculated)

4.960

GRAVY (calculated)

-0.041

Length

426 amino acids

Sequence
(BLAST)

001: MSGCAMNFQL SSFVKFRNDI SSLRICNRDF VFGDLVKEMK VPVLRIKGTQ RSRLLVVNMS QSPVEPQSIT EVESDVNLWK GDNVRNLGAD EMEKFESGGN
101: VGNGFNGGDG NGGGGDGDGD GNGNGNGDDG EEDYEEKEFG PVLKFEEVMR ETEARGATLP SDMLEAAKTF GIRKLLLLRY LDLQSSPGLL GFAIRSWSML
201: RNRMLADPSF LFKIGTEIVI DSCCATVAEV QKRGKDFWAE FELYVADLLV GVVVNVALVG MLAPFVRFGQ PSASTGSLGR MLNAYNALPS SVFEAERPGC
301: SFSAQQRLAT YFYKGIMYGA VGFGCGIVGQ GIANLIMTAK RSINKSEEDI PVPPLIKSAA LWGVFLSVSS NTRYQIINGL ERVVEASPFA KKVPPAALAF
401: TVGVRFANNI YGGMQFVDWA RLSGCQ

Best Arabidopsis Sequence Match ( AT2G37860.3 )
(BLAST)

001: MAGCAMNLQF SSVVKVRNEI SSFGICNRDF VFRDLAKAMK VPVLRIRGGS GRQRSRLFVV NMSQSPIEPQ SGGFAATEQI KGEGDNSILG KDNVRNLGTD
101: QLENLDIDGN VGDGFNGSDG NGGGGGGGNG GEGDGEGEDY EEKEFGPILK FEEVMKETEA RGATLPSDML EAAKNYGIRK VLLLRYLDLQ SSAGLLGFAI
201: RSWAMLRNRM LADPSFLFKI GAEIVIDSCC ATVAEVQKRG KDFWAEFELY VADLLVGTVV NIALVGMLAP YVRFGQPSAS PGFLGRMVFA YNALPSSVFE
301: AERPGCRFSA QQRLATYFYK GIMYGAVGFG CGIVGQGIAN LIMTAKRNIN KSEENIPVPP LIKSAALWGV FLSVSSNTRY QIINGLERVV EASPFAKKFP
401: PAAMAFTVGV RLANNIYGGM QFVDWARLSG CQ

Arabidopsis Description

REProtein RETICULATA, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:B9DFK5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.