CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005154.1-P	Field mustard	plastid	96.69	96.69
CDX91387	Canola	plastid	94.09	93.87
CDY07766	Canola	plastid	85.11	86.96
CDY59488	Canola	plastid	83.45	84.25
VIT_08s0007g01250.t01	Wine grape	cytosol	61.7	69.97
HORVU2Hr1G049760.6	Barley	cytosol, peroxisome	52.48	62.36
KRH49190	Soybean	endoplasmic reticulum	65.01	62.08
KRH00055	Soybean	plastid	64.07	60.9
CDY26956	Canola	plastid	58.16	58.43
CDX92336	Canola	plastid	57.68	57.68
TraesCS2B01G261500.1	Wheat	golgi, unclear	56.5	55.84
TraesCS2A01G234300.1	Wheat	mitochondrion, plastid	56.03	55.63
TraesCS2D01G241700.1	Wheat	golgi, unclear	56.26	55.61
EER98239	Sorghum	plastid	56.97	55.28
Os07t0240300-01	Rice	plastid	57.68	55.08
Zm00001d019249_P002	Maize	mitochondrion, plastid	56.03	53.38
CDX88782	Canola	plastid	52.96	38.75
CDX71014	Canola	plastid	53.9	38.58
CDX70479	Canola	plastid	24.11	27.2
CDX78491	Canola	plastid	23.88	26.86
CDY53965	Canola	plastid	23.88	26.65
CDX97204	Canola	plastid	23.4	26.47
CDY35990	Canola	plastid	20.09	26.4
CDY27990	Canola	plastid	19.86	26.17
CDY22156	Canola	plastid	20.09	24.93
CDY66586	Canola	plastid	19.62	24.27
CDX87117	Canola	plastid	20.33	16.35
CDX80466	Canola	plastid	20.33	16.32
CDY52926	Canola	plastid	23.88	13.59
CDX93185	Canola	plastid	23.64	13.59
CDY31998	Canola	plastid	21.75	12.38
CDX67635	Canola	plastid	21.75	12.38
CDX88129	Canola	cytosol	19.86	4.86
CDY67668	Canola	mitochondrion	0.95	2.37

Protein Annotations

EnsemblPlants:CDX74930	EnsemblPlantsGene:GSBRNA2T00116933001	GO:A0A078CDH1	InterPro:RETICULATA-related	PANTHER:PTHR31038	PANTHER:PTHR31038:SF5
PFAM:PF11891	ProteinID:CDX74930	ProteinID:CDX74930.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EE7422
MapMan:35.1	:	:	:	:	:

Description

BnaA05g06760D

Coordinates

chrLK031802:-:1506683..1508798

Molecular Weight (calculated)

45115.5 Da

IEP (calculated)

7.703

GRAVY (calculated)

0.082

Length

423 amino acids

Sequence
(BLAST)

001: MAGCAMNCQF SSAVKLRNDV ASLRIRSRDS AFGGSVKELK VPVLRIKKQR SRLLMVSMSH SPVEPLSSVV AATEPTEEEG GSILGKGDNV ESLGADEPAK
101: LVTAHGGGGG GGGNGGFNNG GGGGDDGGED YEEKEFGPLL KFEEVMRETE ARGATLPSDM LEAAKTFGIR KLILLRYLDL QSSAGLLGFA IRSWSMLRNR
201: MLADPSFLFK IGTEIVIDSC CATVAEVQKR GKDFWAEFEL YVADLLVGVV VNVALVGMLA PFVRFGQPSA SSGFLGPMLN AYNALPSSVF EAERPGCSFS
301: AQQRLATYFY KGIMYGAVGF GCGIVGQGIA NLIMTAKRSI NKSEEDIPVP PLIKSAALWG VFLSVSSNTR YQIINGLERV VEASPFAKKV PPVALAFTVG
401: VRFANNIYGG MQFVDWARLS GCQ

Best Arabidopsis Sequence Match ( AT2G37860.3 )
(BLAST)

001: MAGCAMNLQF SSVVKVRNEI SSFGICNRDF VFRDLAKAMK VPVLRIRGGS GRQRSRLFVV NMSQSPIEPQ SGGFAATEQI KGEGDNSILG KDNVRNLGTD
101: QLENLDIDGN VGDGFNGSDG NGGGGGGGNG GEGDGEGEDY EEKEFGPILK FEEVMKETEA RGATLPSDML EAAKNYGIRK VLLLRYLDLQ SSAGLLGFAI
201: RSWAMLRNRM LADPSFLFKI GAEIVIDSCC ATVAEVQKRG KDFWAEFELY VADLLVGTVV NIALVGMLAP YVRFGQPSAS PGFLGRMVFA YNALPSSVFE
301: AERPGCRFSA QQRLATYFYK GIMYGAVGFG CGIVGQGIAN LIMTAKRNIN KSEENIPVPP LIKSAALWGV FLSVSSNTRY QIINGLERVV EASPFAKKFP
401: PAAMAFTVGV RLANNIYGGM QFVDWARLSG CQ

Arabidopsis Description

REProtein RETICULATA, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:B9DFK5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.