CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006164.1-P	Field mustard	plastid	100.0	99.47
CDX70479	Canola	plastid	98.14	98.4
CDY53965	Canola	plastid	93.35	92.61
CDX97204	Canola	plastid	91.76	92.25
AT5G12470.1	Thale cress	plastid	87.77	85.49
GSMUA_Achr8P00440_001	Banana	cytosol, plasma membrane, plastid	43.09	75.7
HORVU0Hr1G000510.2	Barley	cytosol	42.29	69.74
KRH24069	Soybean	endoplasmic reticulum, mitochondrion	64.1	66.21
KRH29040	Soybean	endoplasmic reticulum	63.56	64.95
GSMUA_Achr8P08530_001	Banana	plastid	61.97	61.97
Os05t0388600-01	Rice	plasma membrane	61.44	61.11
Zm00001d038085_P001	Maize	plastid	62.23	60.47
PGSC0003DMT400082409	Potato	plastid	65.69	60.1
TraesCS1B01G254100.1	Wheat	unclear	60.9	59.95
Os01t0957200-01	Rice	plastid	61.7	59.64
TraesCS1D01G242600.1	Wheat	golgi	60.9	59.64
Solyc11g065490.1.1	Tomato	plastid	65.43	59.56
TraesCS1A01G242600.1	Wheat	plastid	60.37	59.11
HORVU3Hr1G109880.1	Barley	plastid	58.24	56.3
EES18163	Sorghum	plastid	61.7	56.17
Zm00001d042050_P001	Maize	plastid	56.91	51.57
KXG34151	Sorghum	plastid	53.46	48.09
CDY27990	Canola	plastid	23.94	28.04
CDY35990	Canola	plastid	23.94	27.95
CDY22156	Canola	plastid	23.4	25.81
CDY66586	Canola	plastid	23.14	25.44
CDY07766	Canola	plastid	26.86	24.4
CDX74930	Canola	plastid	26.86	23.88
CDX91387	Canola	plastid	26.33	23.35
CDY59488	Canola	plastid	25.8	23.15
CDX92336	Canola	plastid	25.27	22.46
CDY26956	Canola	plastid	24.73	22.09
CDX93185	Canola	plastid	29.52	15.08
CDX67635	Canola	plastid	29.52	14.94
CDY31998	Canola	plastid	29.52	14.94
CDX88782	Canola	plastid	22.87	14.88
CDY52926	Canola	plastid	29.26	14.8
CDX87117	Canola	plastid	20.48	14.64
CDX80466	Canola	plastid	20.48	14.61
CDX71014	Canola	plastid	22.87	14.55
CDX88129	Canola	cytosol	19.95	4.34
CDY67668	Canola	mitochondrion	1.06	2.37

Protein Annotations

EnsemblPlants:CDX78491	EnsemblPlantsGene:GSBRNA2T00129888001	InterPro:RETICULATA-related	PANTHER:PTHR31620	PANTHER:PTHR31620:SF11	PFAM:PF11891
ProteinID:CDX78491	ProteinID:CDX78491.1	SEG:seg	UniParc:UPI0004EE859B	MapMan:35.1	:

Description

BnaA03g04030D

Coordinates

chrLK031815:-:988440..990984

Molecular Weight (calculated)

40363.5 Da

IEP (calculated)

7.115

GRAVY (calculated)

0.140

Length

376 amino acids

Sequence
(BLAST)

001: MAMTSCFFTV PISESNLTRP HLAFSPRLPS SSSFTGVISA KSISFHRRLT ISPVFSASID NGGSDNNNNG GDGGGGSGDG DGGSGEDRDR NRSEAMMLLA
101: ESGTELESLP KDLAAAIESG RIPGSVITRF LELQRSAVMR WLMQFAGFRE RLLADDLFLA KLAMECGVGV FTKTAAEYER RRENFFNELE VVFADVVMAI
201: IADFMLVYLP APTVSLRPPL ALTAGGISKF FHNCPDNAFQ IAISGTSYSL LQRLGAIARN GAKLFAVGTT SSLVGTAVTN AFIKAKGAVD KTSEGEVETV
301: PIVSTSVAYG VYMAVSANLR YQVVAGVVEQ RFLEPMLHQH KLALSAMCFA VRTGNTFLGS LLWVDYARLI GIQKSH

Best Arabidopsis Sequence Match ( AT5G12470.1 )
(BLAST)

001: MAIASCFFCV PTPNTAISES NLTWPHIASF PRLSSSSSFN GVISAKSISF NRRVPITPVL SASSGNGGSD NNGGGLSGGG GGGDGGKNDG DGHGDEDRDR
101: NRNEAMLLLK ESGIELESLP KDLAAAIEAG RIPGSVITRF LELQKSAVMR WLMQFGGFRE RLLADDLFMA KLAMECGVGI FTKTAAEYER RRENFFNELE
201: VVFADVAMAI IADFMLVYLP APTVSLRPPL ALTAGGISKF FHNCPDNAFQ VALSGTSYTL LQRLGAITRN GAKLFAVGTT SSLVGTAITN AFIKARKAVD
301: QNSEGEVETV PIVSTSVAYG VYMAVSSNLR YQIVAGVIEQ RLLEPMLHQH KLALSALCFA VRTGNTFLGS LLWVDYARLI GIQKSH

Arabidopsis Description

RER4Protein RETICULATA-RELATED 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94CJ5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.