CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042050_P001	Maize	plastid	79.67	80.24
GSMUA_Achr8P00440_001	Banana	cytosol, plasma membrane, plastid	34.21	66.82
Os01t0957200-01	Rice	plastid	60.29	64.78
Bra008880.1-P	Field mustard	cytosol	42.58	63.35
HORVU3Hr1G109880.1	Barley	plastid	55.98	60.15
GSMUA_Achr8P08530_001	Banana	plastid	50.48	56.12
CDX97204	Canola	plastid	49.28	55.08
KRH24069	Soybean	endoplasmic reticulum, mitochondrion	47.61	54.67
KRH29040	Soybean	endoplasmic reticulum	48.09	54.62
EES18163	Sorghum	plastid	53.83	54.48
CDY53965	Canola	plastid	49.04	54.09
CDX70479	Canola	plastid	48.09	53.6
CDX78491	Canola	plastid	48.09	53.46
Bra006164.1-P	Field mustard	plastid	48.09	53.17
PGSC0003DMT400082409	Potato	plastid	50.48	51.34
Solyc11g065490.1.1	Tomato	plastid	50.48	51.09
AT5G12470.1	Thale cress	plastid	46.89	50.78
EES11134	Sorghum	plastid	24.88	26.2
OQU75601	Sorghum	cytosol, mitochondrion, plasma membrane	4.55	25.68
EES13002	Sorghum	mitochondrion, plastid	14.35	24.29
EER98239	Sorghum	plastid	24.16	23.17
KXG33587	Sorghum	plastid	18.9	23.03
EES03820	Sorghum	mitochondrion	30.38	17.3
EES16982	Sorghum	plastid	21.53	16.73
KXG22205	Sorghum	plastid	28.95	16.31

Protein Annotations

EnsemblPlants:KXG34151	EnsemblPlantsGene:SORBI_3003G431900	InterPro:RETICULATA-related	PANTHER:PTHR31620	PANTHER:PTHR31620:SF8	PFAM:PF11891
ProteinID:KXG34151	ProteinID:KXG34151.1	SEG:seg	UniParc:UPI00081ACC26	UniProt:A0A1B6Q8B0	MapMan:35.1

Description

hypothetical protein

Coordinates

chr3:-:73433797..73438097

Molecular Weight (calculated)

43737.4 Da

IEP (calculated)

6.352

GRAVY (calculated)

0.081

Length

418 amino acids

Sequence
(BLAST)

001: MALPPSSSAS SLSAASAQPT PLHLHLTSRA PGRLPLLHFS RAALPLPLRA RIPRTNNPPG TPLHRGLPPP PSASASPSIA GGGFGSDDAE ENHGGDGGSG
101: SGAGGDEGGG DDGGHNDHGG EDAGDGSLGD PRGEALFVLA QLGRKLDSLP SDLAAAIESG RIGGDIVARF NELEANGFIK WLLTFKGFRE RLLADELFLT
201: KLGIECGIGL VAKTAAELQK RGDNFFKEIE VVISDVVMAI VADVMLVYLP APTIGLQPPI ARNASAIASF FSSCPDNAFQ IALAGRSFTL VQRIGAFVRN
301: AAKLLVVGTT ASLVGTSVTS AALKAKAAVN KDEAVEIPVL QTSIAYGIYM SISSNLRYQL LAGVLEQRIL EPLLHNQKLL LSAMCFMVRS GNTFLGSLLW
401: IDYARWIGVQ KGHDHEEA

Best Arabidopsis Sequence Match ( AT5G12470.1 )
(BLAST)

001: MAIASCFFCV PTPNTAISES NLTWPHIASF PRLSSSSSFN GVISAKSISF NRRVPITPVL SASSGNGGSD NNGGGLSGGG GGGDGGKNDG DGHGDEDRDR
101: NRNEAMLLLK ESGIELESLP KDLAAAIEAG RIPGSVITRF LELQKSAVMR WLMQFGGFRE RLLADDLFMA KLAMECGVGI FTKTAAEYER RRENFFNELE
201: VVFADVAMAI IADFMLVYLP APTVSLRPPL ALTAGGISKF FHNCPDNAFQ VALSGTSYTL LQRLGAITRN GAKLFAVGTT SSLVGTAITN AFIKARKAVD
301: QNSEGEVETV PIVSTSVAYG VYMAVSSNLR YQIVAGVIEQ RLLEPMLHQH KLALSALCFA VRTGNTFLGS LLWVDYARLI GIQKSH

Arabidopsis Description

RER4Protein RETICULATA-RELATED 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94CJ5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.