CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, plasma membrane
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES11134	Sorghum	plastid	94.59	17.63
Zm00001d002980_P001	Maize	plastid	93.24	17.25
Os04t0524400-01	Rice	plastid	91.89	17.04
TraesCS2A01G377800.1	Wheat	plastid	89.19	16.84
TraesCS2D01G374200.1	Wheat	plastid	89.19	16.79
TraesCS2B01G394800.1	Wheat	golgi, plastid	89.19	16.79
HORVU2Hr1G090260.1	Barley	plastid	87.84	15.93
Solyc09g011340.2.1	Tomato	plastid	78.38	13.55
PGSC0003DMT400062339	Potato	mitochondrion	78.38	13.49
EER98239	Sorghum	plastid	74.32	12.61
GSMUA_Achr8P13730_001	Banana	extracellular, plasma membrane	87.84	9.82
EES13002	Sorghum	mitochondrion, plastid	22.97	6.88
KXG33587	Sorghum	plastid	25.68	5.54
KXG34151	Sorghum	plastid	25.68	4.55
EES18163	Sorghum	plastid	22.97	4.12
EES16982	Sorghum	plastid	25.68	3.53
KXG22205	Sorghum	plastid	24.32	2.43
EES03820	Sorghum	mitochondrion	18.92	1.91
Os03t0390900-01	Rice	plastid	0.0	0.0

Protein Annotations

EnsemblPlants:OQU75601	EnsemblPlantsGene:SORBI_3K044404	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:RETICULATA-related
PANTHER:PTHR31038	PANTHER:PTHR31038:SF5	PFAM:PF11891	ProteinID:OQU75601	ProteinID:OQU75601.1	TMHMM:TMhelix
UniParc:UPI0009DC8AA1	UniProt:A0A1W0VQS8	MapMan:35.1	:	:	:

Description

hypothetical protein

Coordinates

chrsuper_1713:-:3028..3789

Molecular Weight (calculated)

8090.0 Da

IEP (calculated)

9.318

GRAVY (calculated)

0.150

Length

74 amino acids

Sequence
(BLAST)

1: VFEAERPGCR FTVQQRIGTY FYKGVLYGSV GFVCGIIGQG IANMIMTAKR SVRKSDEDIP VPPLVKSAAM WGSC

Best Arabidopsis Sequence Match ( AT2G37860.3 )
(BLAST)

001: MAGCAMNLQF SSVVKVRNEI SSFGICNRDF VFRDLAKAMK VPVLRIRGGS GRQRSRLFVV NMSQSPIEPQ SGGFAATEQI KGEGDNSILG KDNVRNLGTD
101: QLENLDIDGN VGDGFNGSDG NGGGGGGGNG GEGDGEGEDY EEKEFGPILK FEEVMKETEA RGATLPSDML EAAKNYGIRK VLLLRYLDLQ SSAGLLGFAI
201: RSWAMLRNRM LADPSFLFKI GAEIVIDSCC ATVAEVQKRG KDFWAEFELY VADLLVGTVV NIALVGMLAP YVRFGQPSAS PGFLGRMVFA YNALPSSVFE
301: AERPGCRFSA QQRLATYFYK GIMYGAVGFG CGIVGQGIAN LIMTAKRNIN KSEENIPVPP LIKSAALWGV FLSVSSNTRY QIINGLERVV EASPFAKKFP
401: PAAMAFTVGV RLANNIYGGM QFVDWARLSG CQ

Arabidopsis Description

REProtein RETICULATA, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:B9DFK5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.