CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 1
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plasma membrane, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plasma membrane
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67635	Canola	plastid	97.31	97.31
AT3G56140.1	Thale cress	plastid	91.52	91.28
CDX93185	Canola	plastid	77.79	78.53
CDY52926	Canola	plastid	77.39	77.39
HORVU5Hr1G020100.2	Barley	cytosol	21.53	68.09
VIT_13s0067g02090.t01	Wine grape	mitochondrion, plastid	66.49	65.95
PGSC0003DMT400061517	Potato	mitochondrion	66.22	65.86
Solyc06g050620.2.1	Tomato	mitochondrion	65.95	65.6
KRG97671	Soybean	plastid	63.39	63.05
GSMUA_Achr6P35670_001	Banana	plastid	59.89	62.76
KRH31203	Soybean	plastid	62.72	62.3
TraesCS3D01G341400.1	Wheat	plastid	58.01	59.86
TraesCS3A01G347800.1	Wheat	plastid	58.01	59.86
TraesCS3B01G379700.2	Wheat	mitochondrion, plastid	57.87	59.64
GSMUA_AchrUn_...	Banana	plastid	60.03	59.47
EES03820	Sorghum	mitochondrion	58.55	59.26
Zm00001d043023_P002	Maize	plastid	58.55	58.94
HORVU3Hr1G088220.12	Barley	mitochondrion, plastid	56.93	57.79
Zm00001d010606_P004	Maize	plastid	49.26	56.92
Os01t0826900-01	Rice	cytosol, endoplasmic reticulum, plastid	57.2	56.89
TraesCS1D01G293100.1	Wheat	plastid	56.26	56.72
TraesCS1A01G298100.1	Wheat	plastid	55.85	56.69
TraesCS1B01G307600.1	Wheat	plastid	55.59	56.11
KXG22205	Sorghum	plastid	53.43	53.5
HORVU1Hr1G070330.11	Barley	cytosol	54.91	34.0
CDX97204	Canola	plastid	15.07	29.95
CDX70479	Canola	plastid	15.07	29.87
CDX78491	Canola	plastid	14.94	29.52
CDY53965	Canola	plastid	14.94	29.29
CDY35990	Canola	plastid	11.04	25.47
CDY27990	Canola	plastid	10.77	24.92
CDY22156	Canola	plastid	11.31	24.63
CDY66586	Canola	plastid	11.17	24.27
CDY26956	Canola	plastid	12.79	22.57
CDX92336	Canola	plastid	12.79	22.46
CDX91387	Canola	plastid	12.52	21.93
CDX74930	Canola	plastid	12.38	21.75
CDY07766	Canola	plastid	12.11	21.74
CDY59488	Canola	plastid	12.11	21.48
CDX80466	Canola	plastid	14.67	20.68
CDX87117	Canola	plastid	14.13	19.96
CDX88782	Canola	plastid	13.46	17.3
CDX71014	Canola	plastid	13.06	16.41
CDX88129	Canola	cytosol	14.94	6.42
CDY67668	Canola	mitochondrion	1.08	4.73

Protein Annotations

EnsemblPlants:CDY31998	EnsemblPlantsGene:GSBRNA2T00050811001	Gene3D:3.40.50.11550	InterPro:Cofac_haem-bd_dom	InterPro:RETICULATA-related	PANTHER:PTHR31620
PANTHER:PTHR31620:SF2	PFAM:PF04187	PFAM:PF11891	ProteinID:CDY31998	ProteinID:CDY31998.1	SEG:seg
SUPFAM:SSF159501	UniParc:UPI0004EE23FC	UniProt:A0A078H564	MapMan:35.1	:	:

Description

BnaC06g15760DBnaC06g15760D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H564]

Coordinates

chrLK032284:+:11726..14659

Molecular Weight (calculated)

81502.6 Da

IEP (calculated)

6.789

GRAVY (calculated)

-0.180

Length

743 amino acids

Sequence
(BLAST)

001: MKLTATNDLF ASQPSLHCPC LSSSSSLPRR HGLHLPINLT KKNNSVSIVA LSDSDPPSST AFSRRAILLA PPLLSAAASL FLKPSLSLAS EDNSSATVTS
101: PAGPATPPVV TPPPPPPPPT SVNKEETITS RIYDATAIGE PMAMGKDKKK VWEKLMNARV VYLGEAEQVP TKDDKEVELE IVRNLRKRCL ESERQISVAL
201: EAFPLDLQEQ LNQYMDKRID GETLKSYVTD WPAQLWQEYE PLLTYCRDNA VRLIACGIPL KVLRTVQAEG IRGLSKSERK LYTPPAGSGF ISGFSSFSRR
301: STFDMSLPTQ IVPFGPSSYL SAQARVVEDH TMSQVILQAV ADGGGTGLLL VVTGASHVEY GSRGTGLPAR ISRKFPKKNQ VVVLLDPERQ YLRREGETPV
401: ADFLWYSAAR PCSRNCFDRA EIARVMNAAG RRRDALPQDI QNGLDLGLVS PEVLQNLFDL EQYPLISELA QRFQGFRERL LADPKFLNRL AIEEAISITT
501: TLIAQYEKRK ENFFEELDYV ITDTVRGSVV DFFTVWLPAP TLSFLSYADE TNGPDSIEAL RGLLGSIPDN AFQKSLAGRE WNLNLRVAAV IVGGLKLAGV
601: GVVSSVAAVG ASNALNSVRK VIKPELVVAQ KPKRSPLLKT AMVYGGFLGT SANLRYQIIA GLIEHRISDE LSSQPLLVNT ISFVVRTLNS YFGTQQWIDL
701: ARSTGLQSQK STPASKDVPE VLEETTVECN ATEEENVDKL DNQ

Best Arabidopsis Sequence Match ( AT3G56140.1 )
(BLAST)

001: MKLTTNDLFA SQPLFHCPCS SSSRPRRRRF YGLHFPINLT SEKNNSLSIV ALSDSDLPSR TAFSRRAFLL APPLLVSAAS LFLKPSVSLA SEESSSATVT
101: SPAESAAPPP PPATTTPSPP PPVNKEETIT SRIYDATAIG EPMAMGKDKK KVWEKLLNAR VVYLGEAEQV PTKDDKELEL EIVRNLRKRC VESERQISVA
201: LEAFPLDLQD QLNQYMDKRM DGETLKSYVT HWPAQRWQEY EPLLSYCRDN SVRLIACGTP LKVLRTVQAE GIRGLSKSER KLYTPPAGSG FISGFSSFSR
301: RSTFDMSLPT QIVPFGPSSY LSAQARVVED HTMSQVILQA VADGGGTGLL LVVTGASHVE YGSRGTGLPA RISRKFPKKN QVVVLLDPER QFLRREGETP
401: VADFLWYSAA RPCSRNCFDR AEIARVMNAA GRRRDALPPD IQNGLDLGLV SPEVLQNLFD LEQYPLISEL TQRFQGFRER LLADPKFLNR LAIEEAISIT
501: TTLIAQYEKR KENFFEEIDY VITDTVRGSV VDFFTVWLPA PTLSFLSYAD ETTGPDSIDA LRGLLGSIPD NAFQKSLAGR EWNLNLRIAS VIVGGLKLAG
601: VGVVSSFAAV GASNALNIAR KVIKPELVVA EKPKRSPLLK TAMVYGGFLG TSANLRYQII AGLIEHRLSD ELSSQPLLVN AISFVVRTLN SYFGTQQWID
701: LARSTGLQTQ KSIPASKEIS EALEEPTVEC DTTTEEESID KLNNQ

Arabidopsis Description

RER6Protein RETICULATA-RELATED 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8RWG3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.