Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plasma membrane, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plasma membrane 1
- mitochondrion 2
- cytosol 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G208900.1 | Wheat | cytosol | 92.73 | 50.0 |
| TraesCS1A01G193900.1 | Wheat | cytosol | 92.73 | 50.0 |
| TraesCS1D01G197800.1 | Wheat | cytosol | 90.91 | 49.02 |
| KXG34154 | Sorghum | cytosol | 47.27 | 47.27 |
| Zm00001d030079_P001 | Maize | cytosol, nucleus, plastid | 74.55 | 45.05 |
| Os10t0575950-01 | Rice | cytosol | 80.0 | 44.44 |
| EER94435 | Sorghum | cytosol | 78.18 | 35.54 |
| OQU80353 | Sorghum | cytosol | 60.0 | 34.02 |
| GSMUA_Achr5P14060_001 | Banana | nucleus | 54.55 | 27.03 |
| Bra040769.1-P | Field mustard | cytosol | 41.82 | 23.23 |
| AT1G32310.1 | Thale cress | cytosol | 40.0 | 22.0 |
| VIT_05s0124g00450.t01 | Wine grape | plastid | 34.55 | 21.84 |
| KRH39569 | Soybean | cytosol, plastid | 43.64 | 21.43 |
| CDY61823 | Canola | cytosol | 41.82 | 21.1 |
| CDY32305 | Canola | cytosol | 41.82 | 21.1 |
| OQU76519 | Sorghum | extracellular | 54.55 | 20.98 |
| Solyc08g076580.2.1 | Tomato | cytosol | 40.0 | 19.47 |
| KRH74384 | Soybean | cytosol, plastid | 40.0 | 19.3 |
| PGSC0003DMT400038358 | Potato | plastid | 36.36 | 18.69 |
| KXG30734 | Sorghum | extracellular | 43.64 | 15.09 |
Protein Annotations
| EnsemblPlants:HORVU1Hr1G050750.1 | EnsemblPlantsGene:HORVU1Hr1G050750 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0008150 | GO:GO:0010997 |
| GO:GO:0040007 | GO:GO:0046621 | InterPro:SAMBA | PANTHER:PTHR37387 | UniParc:UPI000295D494 | UniProt:M0Z0X1 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr1H:-:376375968..376376787
Molecular Weight (calculated)
6249.5 Da
IEP (calculated)
10.366
GRAVY (calculated)
-0.822
Length
55 amino acids
Sequence
(BLAST)
(BLAST)
1: MEALQKEVRS LDDNSWMFAA PRSRINLVSK RGGYLPQQQG KIAELDQAAK KTRNC
1: MNGASPAHSL VSTTAVAGGG GSSGAAAGLD DFHFPPDIPS MQERKDEAMR VLKADLMTEL DKEVKSLEED SWMFEGPRSR IHLISRRGNF LKKGGEVKLW
Arabidopsis Description
SAMBAProtein SAMBA [Source:UniProtKB/Swiss-Prot;Acc:Q9C613]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.